miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 84111 0.66 0.476765
Target:  5'- -cGGGCGuCCaggccgaggCGCCCCuuGACGUCGu -3'
miRNA:   3'- gcUCCGCuGGg--------GCGGGGggCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 51105 0.66 0.476765
Target:  5'- aGAuGGCGAgCgaagagCCGCCCCCgCGccguCGCCGg -3'
miRNA:   3'- gCU-CCGCUgG------GGCGGGGG-GCu---GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 27962 0.66 0.476765
Target:  5'- --cGGCGcuccaGCCgugCCGCgCCCCGGCGCUc -3'
miRNA:   3'- gcuCCGC-----UGG---GGCGgGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 128764 0.66 0.476765
Target:  5'- --uGGC--CCCCGCCCCCCaGACcCCc -3'
miRNA:   3'- gcuCCGcuGGGGCGGGGGG-CUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 136828 0.66 0.476765
Target:  5'- gCGuGGCGGgCCaCGaCCCCCaaccACGCCGa -3'
miRNA:   3'- -GCuCCGCUgGG-GC-GGGGGgc--UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 58656 0.66 0.475895
Target:  5'- --cGGCGGCgguugucccgaggCCCGCCaCCaCCGcCGCCGu -3'
miRNA:   3'- gcuCCGCUG-------------GGGCGG-GG-GGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 97061 0.66 0.47156
Target:  5'- gGAGGCGcaugacguguuucagGCCacuaCGCCCggCCUGuACGCCAu -3'
miRNA:   3'- gCUCCGC---------------UGGg---GCGGG--GGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 116770 0.66 0.468106
Target:  5'- aCGAcGGCGcuGCUgUGCUCCgCGGCGCCc -3'
miRNA:   3'- -GCU-CCGC--UGGgGCGGGGgGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 134368 0.66 0.468106
Target:  5'- uGGGGCccGCCggCCGCUCCUCG-CGCCGc -3'
miRNA:   3'- gCUCCGc-UGG--GGCGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 81007 0.66 0.468106
Target:  5'- -uGGGaaGCCCCggaGCCCCCCGGCcCCc -3'
miRNA:   3'- gcUCCgcUGGGG---CGGGGGGCUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 21113 0.66 0.468106
Target:  5'- --cGGCccguccCCCCGuCCCCCCGGC-CCGu -3'
miRNA:   3'- gcuCCGcu----GGGGC-GGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 21155 0.66 0.468106
Target:  5'- --cGGCccguccCCCCGuCCCCCCGGC-CCGu -3'
miRNA:   3'- gcuCCGcu----GGGGC-GGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 67114 0.66 0.468106
Target:  5'- ---cGCGGCCCCGacgucCUUCUCGGCGCCGc -3'
miRNA:   3'- gcucCGCUGGGGC-----GGGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 97136 0.66 0.468106
Target:  5'- --cGGCGAUCgCGCCCgCCacuccaccaugGACGCCu -3'
miRNA:   3'- gcuCCGCUGGgGCGGGgGG-----------CUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 123227 0.66 0.467245
Target:  5'- gCGGGGCGgcuacgggacccgGCCuuGUCCgCUGACGCg- -3'
miRNA:   3'- -GCUCCGC-------------UGGggCGGGgGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 153189 0.66 0.46295
Target:  5'- cCGAGGCcGCCCuCGCcgguucaacccuagaCCgCCCGACgGCCc -3'
miRNA:   3'- -GCUCCGcUGGG-GCG---------------GG-GGGCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 145536 0.66 0.459529
Target:  5'- ---cGCGcCCCCGCCCggccgCCCGcgucGCGCCGg -3'
miRNA:   3'- gcucCGCuGGGGCGGG-----GGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 147913 0.66 0.459529
Target:  5'- gGGGGCaggcgcgggucgGGCCcguacgcccaCCGCCCCCaCG-CGCCGg -3'
miRNA:   3'- gCUCCG------------CUGG----------GGCGGGGG-GCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 128363 0.66 0.459529
Target:  5'- aCGAGGCGGCgaCGCaaaaCCaggCCGACuGCCAg -3'
miRNA:   3'- -GCUCCGCUGggGCGg---GG---GGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 125347 0.66 0.459529
Target:  5'- uGuGGUcGCCCCcaaagucacGCCCCCUGaguuGCGCCGg -3'
miRNA:   3'- gCuCCGcUGGGG---------CGGGGGGC----UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.