miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 25053 0.76 0.109287
Target:  5'- gGAGGCGcgcaagcgcaagaGCCCCGCCCCggCCagGGCGCCGc -3'
miRNA:   3'- gCUCCGC-------------UGGGGCGGGG--GG--CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 154488 0.76 0.109552
Target:  5'- cCGcGGGCGccGCCCCuCCCCCCGcGCGCCGc -3'
miRNA:   3'- -GC-UCCGC--UGGGGcGGGGGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 150 0.76 0.109552
Target:  5'- cCGcGGGCGccGCCCCuCCCCCCGcGCGCCGc -3'
miRNA:   3'- -GC-UCCGC--UGGGGcGGGGGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 135053 0.75 0.114978
Target:  5'- gGAGGCGGCCggCCGCCUCCUGccCGCCu -3'
miRNA:   3'- gCUCCGCUGG--GGCGGGGGGCu-GCGGu -5'
5188 5' -66.8 NC_001798.1 + 32364 0.75 0.117784
Target:  5'- -aGGGCGGCCCCgaGCCCggggcccgcgaCCCGGCGCCc -3'
miRNA:   3'- gcUCCGCUGGGG--CGGG-----------GGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 82008 0.75 0.120653
Target:  5'- gGGGGCGACCgCCGCCgCggCCGcCGCCAg -3'
miRNA:   3'- gCUCCGCUGG-GGCGGgG--GGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 51964 0.75 0.120653
Target:  5'- gGAGG-GGCCgCGCCCCCCcaccccggccccGACGCCGc -3'
miRNA:   3'- gCUCCgCUGGgGCGGGGGG------------CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 137922 0.75 0.123588
Target:  5'- -cGGGCGGCCCgCGCcuCCCCCGGcCGCCc -3'
miRNA:   3'- gcUCCGCUGGG-GCG--GGGGGCU-GCGGu -5'
5188 5' -66.8 NC_001798.1 + 52936 0.75 0.123588
Target:  5'- aCGAGGaGACCgCCGCCCUCCgGGCGCa- -3'
miRNA:   3'- -GCUCCgCUGG-GGCGGGGGG-CUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 70999 0.75 0.126588
Target:  5'- uCGAcccGGCuaucauGAUCCCGCCCCUCGAgGCCAc -3'
miRNA:   3'- -GCU---CCG------CUGGGGCGGGGGGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 27617 0.75 0.126588
Target:  5'- gCGGGGCuGCCCUGCCgCCCGccCGCCGc -3'
miRNA:   3'- -GCUCCGcUGGGGCGGgGGGCu-GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 25098 0.75 0.129656
Target:  5'- gGGcGGCGcCCCgCGCCCCCCGAagaagaGCCGc -3'
miRNA:   3'- gCU-CCGCuGGG-GCGGGGGGCUg-----CGGU- -5'
5188 5' -66.8 NC_001798.1 + 31874 0.75 0.129656
Target:  5'- gGGGGCGGCggCCCGCCCCCggaagaGGCGCgGg -3'
miRNA:   3'- gCUCCGCUG--GGGCGGGGGg-----CUGCGgU- -5'
5188 5' -66.8 NC_001798.1 + 115528 0.74 0.135999
Target:  5'- aCGucGCGGCCCCgGCCggCCCCGGCGCgGa -3'
miRNA:   3'- -GCucCGCUGGGG-CGG--GGGGCUGCGgU- -5'
5188 5' -66.8 NC_001798.1 + 119027 0.74 0.137957
Target:  5'- cCGGGGCauccgggaccucaACCCCGaCCCCCgGACGCCc -3'
miRNA:   3'- -GCUCCGc------------UGGGGC-GGGGGgCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 2095 0.74 0.139276
Target:  5'- cCGGGGgGGgCCCGCCCCC-GGCGCg- -3'
miRNA:   3'- -GCUCCgCUgGGGCGGGGGgCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 54612 0.74 0.146049
Target:  5'- cCGGGGCGcCCCCGCgCCuCCCGccccgcaaccccGCGCCc -3'
miRNA:   3'- -GCUCCGCuGGGGCG-GG-GGGC------------UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 78825 0.74 0.149547
Target:  5'- cCGcGGCGacgGCCCCGgCCCCUGGCGCg- -3'
miRNA:   3'- -GCuCCGC---UGGGGCgGGGGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 74632 0.74 0.149547
Target:  5'- uGGGGcCGA-CCgGCCCCCCGAgGCCc -3'
miRNA:   3'- gCUCC-GCUgGGgCGGGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 52305 0.74 0.149547
Target:  5'- gGAGGCGcuguuucgcGCCCUGCCCCUgGGCaGCCc -3'
miRNA:   3'- gCUCCGC---------UGGGGCGGGGGgCUG-CGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.