miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 5614 0.72 0.202396
Target:  5'- cCGcGGGCGGCUCCGCCCCaaagggggCGGgGCCGc -3'
miRNA:   3'- -GC-UCCGCUGGGGCGGGGg-------GCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 5729 0.66 0.485502
Target:  5'- --uGGCG-CCCUGCCCggggCCCG-CGUCAu -3'
miRNA:   3'- gcuCCGCuGGGGCGGG----GGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 5867 0.66 0.485502
Target:  5'- --uGGCG-CCCUGCCCggggCCCG-CGUCAu -3'
miRNA:   3'- gcuCCGCuGGGGCGGG----GGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 7634 0.66 0.485502
Target:  5'- gCGcGGacCGGCCCCcggaGUCCCCCGGCuCCGa -3'
miRNA:   3'- -GCuCC--GCUGGGG----CGGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 9014 0.7 0.27669
Target:  5'- -cAGGaCGGCCCCgagacccaccGCCCCCCG-CaGCCAg -3'
miRNA:   3'- gcUCC-GCUGGGG----------CGGGGGGCuG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 9610 0.67 0.386395
Target:  5'- cCGAgGGCGGCCagcaacagggCCGCCCCCagcacCGCCc -3'
miRNA:   3'- -GCU-CCGCUGG----------GGCGGGGGgcu--GCGGu -5'
5188 5' -66.8 NC_001798.1 + 10406 0.66 0.485502
Target:  5'- aGGGGCGGgcUCCaCGaCCagaaCCaCCGACGCCAc -3'
miRNA:   3'- gCUCCGCU--GGG-GC-GG----GG-GGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 13658 0.66 0.450192
Target:  5'- gGAGucccaccGCGACaacuagcagggCCGCCgUCCCGACGCCGg -3'
miRNA:   3'- gCUC-------CGCUGg----------GGCGG-GGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 14794 0.69 0.321362
Target:  5'- uCGGGuGCGcguaucgccugcGCCCCGCCCggCCG-CGCCAa -3'
miRNA:   3'- -GCUC-CGC------------UGGGGCGGGg-GGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 15134 0.66 0.485502
Target:  5'- uCGGGGgGuuCgCCG-UCCCCGGCGCCc -3'
miRNA:   3'- -GCUCCgCugG-GGCgGGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 15529 0.66 0.445982
Target:  5'- gGAGGCgcugcugguguucguGugCCCGgCCCCgGGCGUUg -3'
miRNA:   3'- gCUCCG---------------CugGGGCgGGGGgCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 15622 0.71 0.231867
Target:  5'- gGAGGCGACUgCCGUuuCCUCCGGCGUa- -3'
miRNA:   3'- gCUCCGCUGG-GGCG--GGGGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 16190 0.71 0.242466
Target:  5'- cCGGGGgGACgcacgggCCGCCCUCCGcacGCGCCGc -3'
miRNA:   3'- -GCUCCgCUGg------GGCGGGGGGC---UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 16635 0.68 0.356446
Target:  5'- cCGGGGCaGGUCuuGCCgCCCGGCGuCCGc -3'
miRNA:   3'- -GCUCCG-CUGGggCGGgGGGCUGC-GGU- -5'
5188 5' -66.8 NC_001798.1 + 19212 0.69 0.301583
Target:  5'- uGucGUgGACCCCGUUCCCCGcaGCGCCu -3'
miRNA:   3'- gCucCG-CUGGGGCGGGGGGC--UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 20019 0.66 0.459529
Target:  5'- cCGGGGagGGCCCC-CCCUCCG-UGUCGg -3'
miRNA:   3'- -GCUCCg-CUGGGGcGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 21076 0.71 0.221661
Target:  5'- --cGG-GGCCCCGuCCCCCCGGC-CCGu -3'
miRNA:   3'- gcuCCgCUGGGGC-GGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 21113 0.66 0.468106
Target:  5'- --cGGCccguccCCCCGuCCCCCCGGC-CCGu -3'
miRNA:   3'- gcuCCGcu----GGGGC-GGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 21155 0.66 0.468106
Target:  5'- --cGGCccguccCCCCGuCCCCCCGGC-CCGu -3'
miRNA:   3'- gcuCCGcu----GGGGC-GGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 21333 0.69 0.328168
Target:  5'- --cGGCccCCCgGCCCCCCGGC-CCGu -3'
miRNA:   3'- gcuCCGcuGGGgCGGGGGGCUGcGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.