miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 150 0.76 0.109552
Target:  5'- cCGcGGGCGccGCCCCuCCCCCCGcGCGCCGc -3'
miRNA:   3'- -GC-UCCGC--UGGGGcGGGGGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 289 0.72 0.202396
Target:  5'- ---aGCu-CCCCGCCCCCCcgaaGACGCCAg -3'
miRNA:   3'- gcucCGcuGGGGCGGGGGG----CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 419 0.72 0.184602
Target:  5'- uCGcGGCaGCCCCucCCCCCCGcGCGCCAc -3'
miRNA:   3'- -GCuCCGcUGGGGc-GGGGGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 505 0.71 0.237117
Target:  5'- gGGGGCuucCCCCGCCCCUCcccccGCGCCc -3'
miRNA:   3'- gCUCCGcu-GGGGCGGGGGGc----UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 1252 0.68 0.363778
Target:  5'- gGGGGCGGgCCCGCgUCCgCGuCGUCGc -3'
miRNA:   3'- gCUCCGCUgGGGCGgGGG-GCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 1508 0.73 0.168203
Target:  5'- cCGAGGCGgcgGCCCgGCCgUCCaGCGCCGg -3'
miRNA:   3'- -GCUCCGC---UGGGgCGGgGGGcUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 1874 0.66 0.437629
Target:  5'- uGAGGCGGCggucgcaggcgccggCCagcaGCCCCaggaacuccaCGGCGCCGg -3'
miRNA:   3'- gCUCCGCUG---------------GGg---CGGGGg---------GCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 2095 0.74 0.139276
Target:  5'- cCGGGGgGGgCCCGCCCCC-GGCGCg- -3'
miRNA:   3'- -GCUCCgCUgGGGCGGGGGgCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 2608 0.68 0.342096
Target:  5'- gGGGGCGcgggGCgCCGCCCggCGGCGCCc -3'
miRNA:   3'- gCUCCGC----UGgGGCGGGggGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 2983 0.72 0.193319
Target:  5'- gCGGGGCGGCcggCCCGCgggCCCCgGGCGCgGg -3'
miRNA:   3'- -GCUCCGCUG---GGGCG---GGGGgCUGCGgU- -5'
5188 5' -66.8 NC_001798.1 + 3229 0.68 0.371214
Target:  5'- -cAGGCG-CCCCagggcggcgaGCaCCCCCGcgGCGCCGu -3'
miRNA:   3'- gcUCCGCuGGGG----------CG-GGGGGC--UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 3295 0.66 0.485502
Target:  5'- --cGGCGACgCCGCCg-CCGACGgCAa -3'
miRNA:   3'- gcuCCGCUGgGGCGGggGGCUGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 3798 0.69 0.301583
Target:  5'- cCGAGGCcucgaaccgGGCCCgCGCCUCCUccgccucgGGCGCCc -3'
miRNA:   3'- -GCUCCG---------CUGGG-GCGGGGGG--------CUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 3851 0.68 0.356446
Target:  5'- cCGGGGCGGCUgUCGCCCagCCCGccguacagcacGCGCCc -3'
miRNA:   3'- -GCUCCGCUGG-GGCGGG--GGGC-----------UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 3900 0.68 0.371214
Target:  5'- gGGGGcCGGCCCCGggccacggcuCCCCgCUGACGUa- -3'
miRNA:   3'- gCUCC-GCUGGGGC----------GGGG-GGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 4131 0.7 0.285211
Target:  5'- cCGGGGCGccGCCCCcggggcccucgcggGCaCCCCCGccuccucgucguccGCGCCGa -3'
miRNA:   3'- -GCUCCGC--UGGGG--------------CG-GGGGGC--------------UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 4925 0.67 0.401978
Target:  5'- cCGccGCGGCCCggagaCGUCCCCCGuccucgucCGCCAu -3'
miRNA:   3'- -GCucCGCUGGG-----GCGGGGGGCu-------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 5288 0.67 0.401978
Target:  5'- gGAGGagcgauCGACgCCGCCgcgCCCCGGCucGCCGg -3'
miRNA:   3'- gCUCC------GCUGgGGCGG---GGGGCUG--CGGU- -5'
5188 5' -66.8 NC_001798.1 + 5356 0.72 0.207071
Target:  5'- ---cGCGGCCCCGCCCC--GACGCCc -3'
miRNA:   3'- gcucCGCUGGGGCGGGGggCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 5543 0.67 0.394137
Target:  5'- uGAGaugcCGGCCCCGCgCUCCCGuuggccccCGCCGg -3'
miRNA:   3'- gCUCc---GCUGGGGCG-GGGGGCu-------GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.