miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 154488 0.76 0.109552
Target:  5'- cCGcGGGCGccGCCCCuCCCCCCGcGCGCCGc -3'
miRNA:   3'- -GC-UCCGC--UGGGGcGGGGGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 154098 0.66 0.48025
Target:  5'- cCGGGGCgcggccggcgccgggGACCCCGgCggcggggaCCCCGGCGgCGg -3'
miRNA:   3'- -GCUCCG---------------CUGGGGCgG--------GGGGCUGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 153189 0.66 0.46295
Target:  5'- cCGAGGCcGCCCuCGCcgguucaacccuagaCCgCCCGACgGCCc -3'
miRNA:   3'- -GCUCCGcUGGG-GCG---------------GG-GGGCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 153050 0.68 0.371214
Target:  5'- gCGGuuGGcCGGCgCCGCCCCCUGGgGCgGg -3'
miRNA:   3'- -GCU--CC-GCUGgGGCGGGGGGCUgCGgU- -5'
5188 5' -66.8 NC_001798.1 + 152550 0.79 0.068772
Target:  5'- uCGGGGCGGCCCCGUCCCCgGGgaCCAa -3'
miRNA:   3'- -GCUCCGCUGGGGCGGGGGgCUgcGGU- -5'
5188 5' -66.8 NC_001798.1 + 152099 0.72 0.21184
Target:  5'- gGGGGuCGGCCCCGUcaagcguccccgCCCCCGA-GCCc -3'
miRNA:   3'- gCUCC-GCUGGGGCG------------GGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 152051 0.67 0.417147
Target:  5'- gGGGGCGgcgcacgGCCCacggggGUCCCCCGAcCGCUu -3'
miRNA:   3'- gCUCCGC-------UGGGg-----CGGGGGGCU-GCGGu -5'
5188 5' -66.8 NC_001798.1 + 151851 0.67 0.393358
Target:  5'- uGAGGCGGgacCCCCGCgccguguCCCCCG-UGUCc -3'
miRNA:   3'- gCUCCGCU---GGGGCG-------GGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 150884 0.68 0.355719
Target:  5'- gCGGGuCGcCCCCGCaccgccgCCCCCG-CGCCGg -3'
miRNA:   3'- -GCUCcGCuGGGGCG-------GGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 150808 0.67 0.42527
Target:  5'- aCGGGGCG-CCgCCGCUgcugcugCUCCGcgggGCGCCAg -3'
miRNA:   3'- -GCUCCGCuGG-GGCGG-------GGGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 150680 0.69 0.30807
Target:  5'- --cGGCGuCUUCGCCCaCCCGcGCGCCu -3'
miRNA:   3'- gcuCCGCuGGGGCGGG-GGGC-UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 150655 0.77 0.090166
Target:  5'- gGGGGCG-UCCUGCCCUCCGcCGCCGc -3'
miRNA:   3'- gCUCCGCuGGGGCGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 150499 0.71 0.231867
Target:  5'- uGuGGCaGACCUCcCCCCCCGGgGCCc -3'
miRNA:   3'- gCuCCG-CUGGGGcGGGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 150228 0.7 0.27669
Target:  5'- gCGGGG-GACCCCGgguccuCCCUCCG-CGCCc -3'
miRNA:   3'- -GCUCCgCUGGGGC------GGGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 150170 0.72 0.188916
Target:  5'- gGGGGCgGGCCgCCGCCCCCuccgCGGCGUgGg -3'
miRNA:   3'- gCUCCG-CUGG-GGCGGGGG----GCUGCGgU- -5'
5188 5' -66.8 NC_001798.1 + 149980 0.66 0.44263
Target:  5'- gGGGGCG-CggCGCCCgCgGACGCCGg -3'
miRNA:   3'- gCUCCGCuGggGCGGGgGgCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 148853 0.66 0.44263
Target:  5'- gGGGGCGGCuucucgugCCCGCCCCCCcucCuCCu -3'
miRNA:   3'- gCUCCGCUG--------GGGCGGGGGGcu-GcGGu -5'
5188 5' -66.8 NC_001798.1 + 147913 0.66 0.459529
Target:  5'- gGGGGCaggcgcgggucgGGCCcguacgcccaCCGCCCCCaCG-CGCCGg -3'
miRNA:   3'- gCUCCG------------CUGG----------GGCGGGGG-GCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 147299 0.7 0.259117
Target:  5'- -cGGGCcGCCCCGCUCCCgGGC-CCGa -3'
miRNA:   3'- gcUCCGcUGGGGCGGGGGgCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 147234 0.67 0.409918
Target:  5'- gCGcGGgGGCCCCgggGCCCCgggCCG-CGCCGg -3'
miRNA:   3'- -GCuCCgCUGGGG---CGGGG---GGCuGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.