Results 1 - 20 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 115318 | 0.66 | 0.485502 |
Target: 5'- cCGGGGaccugGugCCCGCCCCCg---GCCAc -3' miRNA: 3'- -GCUCCg----CugGGGCGGGGGgcugCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 128764 | 0.66 | 0.476765 |
Target: 5'- --uGGC--CCCCGCCCCCCaGACcCCc -3' miRNA: 3'- gcuCCGcuGGGGCGGGGGG-CUGcGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 154098 | 0.66 | 0.48025 |
Target: 5'- cCGGGGCgcggccggcgccgggGACCCCGgCggcggggaCCCCGGCGgCGg -3' miRNA: 3'- -GCUCCG---------------CUGGGGCgG--------GGGGCUGCgGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 23857 | 0.66 | 0.484625 |
Target: 5'- -uGGGCGACagCCGCCCCggCCucuggggGGCGCCc -3' miRNA: 3'- gcUCCGCUGg-GGCGGGG--GG-------CUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 92928 | 0.66 | 0.484625 |
Target: 5'- uCGAGGCGgucgucgGgCCCGCCg-CCGugGCCc -3' miRNA: 3'- -GCUCCGC-------UgGGGCGGggGGCugCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 61464 | 0.66 | 0.484625 |
Target: 5'- cCGGGGCcuccgGGCCCCGgagggcuacuuuaCCCCCau-CGCCGu -3' miRNA: 3'- -GCUCCG-----CUGGGGC-------------GGGGGgcuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 7634 | 0.66 | 0.485502 |
Target: 5'- gCGcGGacCGGCCCCcggaGUCCCCCGGCuCCGa -3' miRNA: 3'- -GCuCC--GCUGGGG----CGGGGGGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 10406 | 0.66 | 0.485502 |
Target: 5'- aGGGGCGGgcUCCaCGaCCagaaCCaCCGACGCCAc -3' miRNA: 3'- gCUCCGCU--GGG-GC-GG----GG-GGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 27108 | 0.66 | 0.485502 |
Target: 5'- -cAGGUGGCCCgaGCCCCCC--CGCa- -3' miRNA: 3'- gcUCCGCUGGGg-CGGGGGGcuGCGgu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 29849 | 0.66 | 0.485502 |
Target: 5'- aGAgGGCGACCCCcgggucucagGCCCCCCcuuuuccccgGACcacCCGg -3' miRNA: 3'- gCU-CCGCUGGGG----------CGGGGGG----------CUGc--GGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 34970 | 0.66 | 0.485502 |
Target: 5'- gGGGGCGGCCgCCgaggugcggggGCCCCuCCG--GCCGg -3' miRNA: 3'- gCUCCGCUGG-GG-----------CGGGG-GGCugCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 55081 | 0.66 | 0.485502 |
Target: 5'- uGGGGCGggucuGCCCUcuucuCCCCUCGGCggGCCAc -3' miRNA: 3'- gCUCCGC-----UGGGGc----GGGGGGCUG--CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 3295 | 0.66 | 0.485502 |
Target: 5'- --cGGCGACgCCGCCg-CCGACGgCAa -3' miRNA: 3'- gcuCCGCUGgGGCGGggGGCUGCgGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 5729 | 0.66 | 0.485502 |
Target: 5'- --uGGCG-CCCUGCCCggggCCCG-CGUCAu -3' miRNA: 3'- gcuCCGCuGGGGCGGG----GGGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 5867 | 0.66 | 0.485502 |
Target: 5'- --uGGCG-CCCUGCCCggggCCCG-CGUCAu -3' miRNA: 3'- gcuCCGCuGGGGCGGG----GGGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 15134 | 0.66 | 0.485502 |
Target: 5'- uCGGGGgGuuCgCCG-UCCCCGGCGCCc -3' miRNA: 3'- -GCUCCgCugG-GGCgGGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 26456 | 0.66 | 0.485502 |
Target: 5'- gGAcGCGGgCCCGCCCCCgcaGAuaCGCUg -3' miRNA: 3'- gCUcCGCUgGGGCGGGGGg--CU--GCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 61696 | 0.66 | 0.485502 |
Target: 5'- -aAGGCGAUCCUGgCCCgCaCGACgGCCc -3' miRNA: 3'- gcUCCGCUGGGGCgGGG-G-GCUG-CGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 91314 | 0.66 | 0.485502 |
Target: 5'- gGGGGCaaaaaACCCagaCGCCgCCCGAgcCGCCGg -3' miRNA: 3'- gCUCCGc----UGGG---GCGGgGGGCU--GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 74424 | 0.66 | 0.485502 |
Target: 5'- cCGccGCGGCCCUGCaCCUCuaCGGgGCCAg -3' miRNA: 3'- -GCucCGCUGGGGCG-GGGG--GCUgCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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