miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 98749 1.07 0.000503
Target:  5'- cCGAGGCGACCCCGCCCCCCGACGCCAa -3'
miRNA:   3'- -GCUCCGCUGGGGCGGGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 64106 0.83 0.031643
Target:  5'- uCGGGGCcGCCCCGgCCCCCGACGCg- -3'
miRNA:   3'- -GCUCCGcUGGGGCgGGGGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 107439 0.82 0.038715
Target:  5'- cCGcGGCGACCCCGCgCCCCGACcCCGa -3'
miRNA:   3'- -GCuCCGCUGGGGCGgGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 25167 0.82 0.040712
Target:  5'- gGGGGCcgcgccCCCCGCCCCgCCGACGCCGc -3'
miRNA:   3'- gCUCCGcu----GGGGCGGGG-GGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 74740 0.8 0.050635
Target:  5'- gGAGGgGACCCCGCCcgcgaagcccucggCCCCGgACGCCGc -3'
miRNA:   3'- gCUCCgCUGGGGCGG--------------GGGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 37341 0.8 0.052308
Target:  5'- aGAGGCGACCUcggauCGCCCCCCcaccuACGCCAu -3'
miRNA:   3'- gCUCCGCUGGG-----GCGGGGGGc----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 132162 0.8 0.050889
Target:  5'- gCGGGGCGcCCCCcccggacGCCCCCCcgGACGCCAc -3'
miRNA:   3'- -GCUCCGCuGGGG-------CGGGGGG--CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 75192 0.8 0.049757
Target:  5'- gGGGGCccgccGCCCCccggaGCCCCCCGGCGCCGa -3'
miRNA:   3'- gCUCCGc----UGGGG-----CGGGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 124082 0.79 0.059254
Target:  5'- gGAGGCGGCgCCUGCgCCCCGACgGCCc -3'
miRNA:   3'- gCUCCGCUG-GGGCGgGGGGCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 152550 0.79 0.068772
Target:  5'- uCGGGGCGGCCCCGUCCCCgGGgaCCAa -3'
miRNA:   3'- -GCUCCGCUGGGGCGGGGGgCUgcGGU- -5'
5188 5' -66.8 NC_001798.1 + 98602 0.79 0.063842
Target:  5'- --cGGCGGCCCCggcgGCCCCCCG-CGCCu -3'
miRNA:   3'- gcuCCGCUGGGG----CGGGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 43336 0.79 0.068772
Target:  5'- gGGGGCGGCagugCCGCCCCCCG-CGUCGu -3'
miRNA:   3'- gCUCCGCUGg---GGCGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 75056 0.78 0.075918
Target:  5'- cCGAGGU--CCCCGCCuccuCCCCGACGCCc -3'
miRNA:   3'- -GCUCCGcuGGGGCGG----GGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 108516 0.78 0.080542
Target:  5'- cCGAGGUGACCCagcucaagggacuguCGCacaaCCCCGGCGCCu -3'
miRNA:   3'- -GCUCCGCUGGG---------------GCGg---GGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 25437 0.78 0.074067
Target:  5'- gCGcuGCGccGCCCCGCCCCCCGGCGgCGc -3'
miRNA:   3'- -GCucCGC--UGGGGCGGGGGGCUGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 150655 0.77 0.090166
Target:  5'- gGGGGCG-UCCUGCCCUCCGcCGCCGc -3'
miRNA:   3'- gCUCCGCuGGGGCGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 31192 0.77 0.090166
Target:  5'- cCGccGCGACCCgaccggCGCCCCCUGGCGCCc -3'
miRNA:   3'- -GCucCGCUGGG------GCGGGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 22116 0.77 0.094683
Target:  5'- aCGGGGCGACCUCGCCggCCCCuuuGGgGCCGg -3'
miRNA:   3'- -GCUCCGCUGGGGCGG--GGGG---CUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 154488 0.76 0.109552
Target:  5'- cCGcGGGCGccGCCCCuCCCCCCGcGCGCCGc -3'
miRNA:   3'- -GC-UCCGC--UGGGGcGGGGGGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 147079 0.76 0.104367
Target:  5'- --cGGCGGCCgCC-CCCUCCGGCGCCGc -3'
miRNA:   3'- gcuCCGCUGG-GGcGGGGGGCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.