miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 21634 0.67 0.394137
Target:  5'- cCGGGuGCGucgguGCCCCGCUcgCCgCCGGCGUCu -3'
miRNA:   3'- -GCUC-CGC-----UGGGGCGG--GG-GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 21780 0.71 0.216703
Target:  5'- gCGAGGaaCGG-CCCGCCCCCCGuccgggccCGCCu -3'
miRNA:   3'- -GCUCC--GCUgGGGCGGGGGGCu-------GCGGu -5'
5188 5' -66.8 NC_001798.1 + 21814 0.66 0.450192
Target:  5'- uCGGGGCGGagCCCGCgggaugacgcgggCCCCgggcagGGCGCCAg -3'
miRNA:   3'- -GCUCCGCUg-GGGCG-------------GGGGg-----CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 21938 0.69 0.314663
Target:  5'- ---uGCGGCCCCGCCCCCUuugGGCGg-- -3'
miRNA:   3'- gcucCGCUGGGGCGGGGGG---CUGCggu -5'
5188 5' -66.8 NC_001798.1 + 22075 0.7 0.247915
Target:  5'- ---uGCGGCCCCGCCCCCUuuggGGCggaGCCGc -3'
miRNA:   3'- gcucCGCUGGGGCGGGGGG----CUG---CGGU- -5'
5188 5' -66.8 NC_001798.1 + 22116 0.77 0.094683
Target:  5'- aCGGGGCGACCUCGCCggCCCCuuuGGgGCCGg -3'
miRNA:   3'- -GCUCCGCUGGGGCGG--GGGG---CUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 22804 0.68 0.349219
Target:  5'- aCGAccGGCGGCCCCGgaUCUCCGGauccaGCCGa -3'
miRNA:   3'- -GCU--CCGCUGGGGCg-GGGGGCUg----CGGU- -5'
5188 5' -66.8 NC_001798.1 + 22925 0.72 0.202396
Target:  5'- aCGAGGcCGACgaCGCCgCCgCCGAUGCCGu -3'
miRNA:   3'- -GCUCC-GCUGggGCGG-GG-GGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 22960 0.74 0.153121
Target:  5'- aCGAGGCGGCCCCGgCgUCCGGggagGCCGu -3'
miRNA:   3'- -GCUCCGCUGGGGCgGgGGGCUg---CGGU- -5'
5188 5' -66.8 NC_001798.1 + 23056 0.68 0.356446
Target:  5'- aCGAGGCcguucgcacGAUCCCGucgccCCCCCCGgaGCGCg- -3'
miRNA:   3'- -GCUCCG---------CUGGGGC-----GGGGGGC--UGCGgu -5'
5188 5' -66.8 NC_001798.1 + 23292 0.71 0.226715
Target:  5'- uCGccGCGACCCCcggcGCCCCgCCGACaCCAc -3'
miRNA:   3'- -GCucCGCUGGGG----CGGGG-GGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 23476 0.67 0.409918
Target:  5'- aCGAcGaCGACgccgCCCGCgCCCCCGccaGCGCCGc -3'
miRNA:   3'- -GCUcC-GCUG----GGGCG-GGGGGC---UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 23579 0.68 0.371214
Target:  5'- gGGGGCGGCgccccggccgagCCCGCCCagggCCGAgccCGCCc -3'
miRNA:   3'- gCUCCGCUG------------GGGCGGGg---GGCU---GCGGu -5'
5188 5' -66.8 NC_001798.1 + 23717 0.68 0.36674
Target:  5'- -cGGGCGGCCCCggcgggucgaGCuggacgccgacgcggCCUCCGGCGCCu -3'
miRNA:   3'- gcUCCGCUGGGG----------CG---------------GGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 23812 0.72 0.184602
Target:  5'- cCGGGGcCGGCCCCccGCCCCCgGgGCGCg- -3'
miRNA:   3'- -GCUCC-GCUGGGG--CGGGGGgC-UGCGgu -5'
5188 5' -66.8 NC_001798.1 + 23857 0.66 0.484625
Target:  5'- -uGGGCGACagCCGCCCCggCCucuggggGGCGCCc -3'
miRNA:   3'- gcUCCGCUGg-GGCGGGG--GG-------CUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 23900 0.71 0.239244
Target:  5'- gGAGGCGcgggcccgguucgagGCCUCggGCgCCCCGGCGCCc -3'
miRNA:   3'- gCUCCGC---------------UGGGG--CGgGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 24360 0.68 0.36674
Target:  5'- aCGAcGGCGACgacgcccgcgggaagCCCGCCgCCgCCGcCGCCc -3'
miRNA:   3'- -GCU-CCGCUG---------------GGGCGG-GG-GGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 24467 0.68 0.349219
Target:  5'- gCGGGG-GugCUCGCCgCCCUggGGCGCCu -3'
miRNA:   3'- -GCUCCgCugGGGCGG-GGGG--CUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 24677 0.7 0.247366
Target:  5'- cCGGGGCuGGCCggagcccggcccgCCGCgCCCCCG-CGCCc -3'
miRNA:   3'- -GCUCCG-CUGG-------------GGCG-GGGGGCuGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.