miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 3' -58.3 NC_001798.1 + 94130 0.69 0.661352
Target:  5'- -aGUUCcgcgACGGUCUggcCGAGGCCAaccacGCCAu -3'
miRNA:   3'- ugCAAG----UGCCGGAa--GCUCCGGU-----CGGU- -5'
5193 3' -58.3 NC_001798.1 + 96976 0.67 0.768997
Target:  5'- cGCGgacCGCGGCgggcggCGGGGCCAggGCCGg -3'
miRNA:   3'- -UGCaa-GUGCCGgaa---GCUCCGGU--CGGU- -5'
5193 3' -58.3 NC_001798.1 + 97458 0.7 0.580604
Target:  5'- cGCGUgcuggCGCGGCUg--GGGGCCGGCg- -3'
miRNA:   3'- -UGCAa----GUGCCGGaagCUCCGGUCGgu -5'
5193 3' -58.3 NC_001798.1 + 102227 0.7 0.570601
Target:  5'- cCGggCGCGGC--UCGGGGCgGGCCu -3'
miRNA:   3'- uGCaaGUGCCGgaAGCUCCGgUCGGu -5'
5193 3' -58.3 NC_001798.1 + 103313 0.67 0.739608
Target:  5'- gGCGcUgGCGGCCgucUCGAGGacgcgcuCCAGCUg -3'
miRNA:   3'- -UGCaAgUGCCGGa--AGCUCC-------GGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 111012 0.68 0.701418
Target:  5'- uGCGUggcCGCGGCCaggCGuccguGGCCGGCg- -3'
miRNA:   3'- -UGCAa--GUGCCGGaa-GCu----CCGGUCGgu -5'
5193 3' -58.3 NC_001798.1 + 112240 0.66 0.830756
Target:  5'- gGCGacCauGCGGUCUUUGGGGCCuGUCc -3'
miRNA:   3'- -UGCaaG--UGCCGGAAGCUCCGGuCGGu -5'
5193 3' -58.3 NC_001798.1 + 114768 0.66 0.787366
Target:  5'- gGCGgccaUCGCcgcgaGGCCaUCGAGGCCuGGCUc -3'
miRNA:   3'- -UGCa---AGUG-----CCGGaAGCUCCGG-UCGGu -5'
5193 3' -58.3 NC_001798.1 + 115523 0.7 0.600714
Target:  5'- gGCGUacgUCGCGGCCcc---GGCCGGCCc -3'
miRNA:   3'- -UGCA---AGUGCCGGaagcuCCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 121780 0.68 0.681464
Target:  5'- gGCGUcCuCGGUCUcgggCGGGGCCgGGCCGg -3'
miRNA:   3'- -UGCAaGuGCCGGAa---GCUCCGG-UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 121992 0.66 0.80519
Target:  5'- ----aCGCGGCCUccggcgucgccUCGGGGCUccGCCAg -3'
miRNA:   3'- ugcaaGUGCCGGA-----------AGCUCCGGu-CGGU- -5'
5193 3' -58.3 NC_001798.1 + 123901 0.67 0.778246
Target:  5'- cACGgaCACGGCCcccgaaucCGGGGCguGCUg -3'
miRNA:   3'- -UGCaaGUGCCGGaa------GCUCCGguCGGu -5'
5193 3' -58.3 NC_001798.1 + 134149 0.66 0.787366
Target:  5'- gACG-UCuCGGCCccCGGGGCCgucgcGGCCGc -3'
miRNA:   3'- -UGCaAGuGCCGGaaGCUCCGG-----UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 134257 0.69 0.661352
Target:  5'- uGCGUUCugGCGGCCcUgGAGcGCCagacgGGCCGg -3'
miRNA:   3'- -UGCAAG--UGCCGGaAgCUC-CGG-----UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 134617 0.71 0.519397
Target:  5'- gGCGccUUCGCGGaCCUggucgaggugugCGAGGUCGGCCu -3'
miRNA:   3'- -UGC--AAGUGCC-GGAa-----------GCUCCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 135028 0.71 0.531069
Target:  5'- cGCGggCAUGGCCggccguggccUCGGaggcGGCCGGCCGc -3'
miRNA:   3'- -UGCaaGUGCCGGa---------AGCU----CCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 138739 0.68 0.721145
Target:  5'- cGCGcucCGCGGCCccggCGAccguGGCCAGCUg -3'
miRNA:   3'- -UGCaa-GUGCCGGaa--GCU----CCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 139572 0.71 0.502084
Target:  5'- gACGUg-GCGGCCUUgGAGGucccgaCCGGCCu -3'
miRNA:   3'- -UGCAagUGCCGGAAgCUCC------GGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 140898 0.7 0.570601
Target:  5'- gACGUUU-CGGaCCUUCGAGGCUGuGCUg -3'
miRNA:   3'- -UGCAAGuGCC-GGAAGCUCCGGU-CGGu -5'
5193 3' -58.3 NC_001798.1 + 146474 0.68 0.711314
Target:  5'- aGCGc-CGCGGgCUcCGGGGCCgGGCCGg -3'
miRNA:   3'- -UGCaaGUGCCgGAaGCUCCGG-UCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.