miRNA display CGI


Results 1 - 20 of 343 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 23554 0.66 0.522566
Target:  5'- --aGGCgGGGGUGCcCGCGAgGgccCCGGGg -3'
miRNA:   3'- gggUCG-CCCCGCGcGCGCUgC---GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 93086 1.11 0.000363
Target:  5'- cCCCAGCGGGGCGCGCGCGACGCCGGGa -3'
miRNA:   3'- -GGGUCGCCCCGCGCGCGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 21949 0.66 0.513602
Target:  5'- cCCCuuugGGCGGaGCGCGgGaUGACGCgGGc -3'
miRNA:   3'- -GGG----UCGCCcCGCGCgC-GCUGCGgCCc -5'
5193 5' -66.4 NC_001798.1 + 26430 0.66 0.513602
Target:  5'- cCCCcGCuGGuGCuGCGCGaCGACGCggacgCGGGc -3'
miRNA:   3'- -GGGuCGcCC-CG-CGCGC-GCUGCG-----GCCC- -5'
5193 5' -66.4 NC_001798.1 + 39528 0.66 0.513602
Target:  5'- cCCCuccGCGccGCGCcucgccguGgGUGGCGCCGGGg -3'
miRNA:   3'- -GGGu--CGCccCGCG--------CgCGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 138728 0.66 0.513602
Target:  5'- cCCCGGgccGGCGCGCuccgcggccccgGCGACcguggccagcuGCCGGGg -3'
miRNA:   3'- -GGGUCgccCCGCGCG------------CGCUG-----------CGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 130761 0.66 0.519871
Target:  5'- gCCCGcacCGGaccgacgauacgauGGUGCGU-CGGCGCCGGGu -3'
miRNA:   3'- -GGGUc--GCC--------------CCGCGCGcGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 23932 0.66 0.521667
Target:  5'- cCCCGGCGcccguguGGGCGCcgagcuGgGCGACG-CGGc -3'
miRNA:   3'- -GGGUCGC-------CCCGCG------CgCGCUGCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 53659 0.66 0.522566
Target:  5'- --uGGCGGGGU-UGCGCGACG-CGGc -3'
miRNA:   3'- gggUCGCCCCGcGCGCGCUGCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 15552 0.66 0.522566
Target:  5'- gCCCGGCcccGGGCGuUGC-CGcCGCCGcGGc -3'
miRNA:   3'- -GGGUCGc--CCCGC-GCGcGCuGCGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 17232 0.66 0.522566
Target:  5'- gCCUuuCGGGGU-CGCGCGGgGCCGa- -3'
miRNA:   3'- -GGGucGCCCCGcGCGCGCUgCGGCcc -5'
5193 5' -66.4 NC_001798.1 + 28354 0.65 0.528877
Target:  5'- gCCGGCGGcGGCcccccGCGUccccgcccgcggacGCGcCGCgCGGGa -3'
miRNA:   3'- gGGUCGCC-CCG-----CGCG--------------CGCuGCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 51183 0.66 0.522566
Target:  5'- cCCgGGCGGcGGCGCcC-CccCGCCGGGc -3'
miRNA:   3'- -GGgUCGCC-CCGCGcGcGcuGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 61021 0.66 0.522566
Target:  5'- aCCGGauGGGgGUuaGgGGgGCCGGGg -3'
miRNA:   3'- gGGUCgcCCCgCGcgCgCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 147076 0.66 0.522566
Target:  5'- cCUCGGCGGccgcccccuccGGCGcCGCGCGuucgcgaaagGCGCgaaaGGGg -3'
miRNA:   3'- -GGGUCGCC-----------CCGC-GCGCGC----------UGCGg---CCC- -5'
5193 5' -66.4 NC_001798.1 + 1426 0.66 0.522566
Target:  5'- cCCCAGCGcgcgcaGGCGCgGUGCGaguGCGCCu-- -3'
miRNA:   3'- -GGGUCGCc-----CCGCG-CGCGC---UGCGGccc -5'
5193 5' -66.4 NC_001798.1 + 4835 0.66 0.522566
Target:  5'- aCCCGggccGCGcGGCGgG-GCGACGguCCGGGu -3'
miRNA:   3'- -GGGU----CGCcCCGCgCgCGCUGC--GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 36273 0.66 0.522566
Target:  5'- cCCCGGgGuGGGCG-GCGgGGgggggUGCCGuGGg -3'
miRNA:   3'- -GGGUCgC-CCCGCgCGCgCU-----GCGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 58195 0.66 0.522566
Target:  5'- cCCCAGCau--CGCGUauacgGCGAUGUCGGGg -3'
miRNA:   3'- -GGGUCGccccGCGCG-----CGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 83885 0.66 0.522566
Target:  5'- cCCCGGCccGGGCGCuccggaagagugGUGCGcCGCCGc- -3'
miRNA:   3'- -GGGUCGc-CCCGCG------------CGCGCuGCGGCcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.