miRNA display CGI


Results 1 - 20 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 55 0.69 0.358613
Target:  5'- --gGGgGGGGCGCGaaggcgggcgGCGGCGgCGGGc -3'
miRNA:   3'- gggUCgCCCCGCGCg---------CGCUGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 147 0.67 0.419092
Target:  5'- cCCCcGC-GGGCGCcgccccuccccccGCGCGcCGCgGGGc -3'
miRNA:   3'- -GGGuCGcCCCGCG-------------CGCGCuGCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 1285 0.81 0.05619
Target:  5'- aCCAGCGGGG-GCGCGuCGcCGUCGGGc -3'
miRNA:   3'- gGGUCGCCCCgCGCGC-GCuGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 1336 0.67 0.461272
Target:  5'- uCCCGccGCGGccCGCGCaGCucCGCCGGGc -3'
miRNA:   3'- -GGGU--CGCCccGCGCG-CGcuGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 1426 0.66 0.522566
Target:  5'- cCCCAGCGcgcgcaGGCGCgGUGCGaguGCGCCu-- -3'
miRNA:   3'- -GGGUCGCc-----CCGCG-CGCGC---UGCGGccc -5'
5193 5' -66.4 NC_001798.1 + 1506 0.66 0.513602
Target:  5'- gCCCgaGGCGGcGGCccgGC-CGUccaGCGCCGGGa -3'
miRNA:   3'- -GGG--UCGCC-CCG---CGcGCGc--UGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 1576 0.67 0.461272
Target:  5'- aCCAGCgugucGGGGCcgaaGCGCGUG-CGCaCGcGGu -3'
miRNA:   3'- gGGUCG-----CCCCG----CGCGCGCuGCG-GC-CC- -5'
5193 5' -66.4 NC_001798.1 + 1624 0.72 0.229007
Target:  5'- gCCCcGCGGcagaGGCGCaGCgGCGGCGCguCGGGg -3'
miRNA:   3'- -GGGuCGCC----CCGCG-CG-CGCUGCG--GCCC- -5'
5193 5' -66.4 NC_001798.1 + 2190 0.67 0.419897
Target:  5'- aCCUGGCGcauccaGGcCGcCGCGCGGCGCagCGGGc -3'
miRNA:   3'- -GGGUCGCc-----CC-GC-GCGCGCUGCG--GCCC- -5'
5193 5' -66.4 NC_001798.1 + 2234 0.78 0.08327
Target:  5'- gCgCAGCGGgccgaaggcGGCGgGCGCGcCGCCGGGg -3'
miRNA:   3'- -GgGUCGCC---------CCGCgCGCGCuGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 2292 0.74 0.158857
Target:  5'- gCCAGCGaGGccaGCGCGCGCGggucgaacaugaGgGCCGGGc -3'
miRNA:   3'- gGGUCGC-CC---CGCGCGCGC------------UgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 2379 0.73 0.186798
Target:  5'- gCCC-GCGGGGCGCaguaggccuccaGgGCGGCGgCCGaGGg -3'
miRNA:   3'- -GGGuCGCCCCGCG------------CgCGCUGC-GGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 2438 0.69 0.337302
Target:  5'- cCCCGGCGGcuGGCgGCGCcagccgcccuGCGG-GUCGGGg -3'
miRNA:   3'- -GGGUCGCC--CCG-CGCG----------CGCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 2502 0.74 0.166431
Target:  5'- gCC-GCGGGGCGCGgcggcCGCGGCGgCGGc -3'
miRNA:   3'- gGGuCGCCCCGCGC-----GCGCUGCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 2532 0.71 0.23942
Target:  5'- gUCGGCGGGGCGggggGCGCGGCcCCcgcGGGa -3'
miRNA:   3'- gGGUCGCCCCGCg---CGCGCUGcGG---CCC- -5'
5193 5' -66.4 NC_001798.1 + 2571 0.68 0.388462
Target:  5'- gCC-GCGGGGCGgggggcgucCGCGCGGCucuucuUCGGGg -3'
miRNA:   3'- gGGuCGCCCCGC---------GCGCGCUGc-----GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 2613 0.71 0.250226
Target:  5'- ---cGCGGGGCGcCGCccgGCGGCGCCcuggccGGGg -3'
miRNA:   3'- ggguCGCCCCGC-GCG---CGCUGCGG------CCC- -5'
5193 5' -66.4 NC_001798.1 + 2670 0.71 0.267185
Target:  5'- uCCCGcggcGCGGaGGCGgGCGCGGCgagcgagucgGCCGcGGc -3'
miRNA:   3'- -GGGU----CGCC-CCGCgCGCGCUG----------CGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 2786 0.7 0.310346
Target:  5'- gCUCAGCa-GGCGCGggcucCGCGgcaGCGCCGGGc -3'
miRNA:   3'- -GGGUCGccCCGCGC-----GCGC---UGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 2961 0.76 0.128501
Target:  5'- --aGGCGGGGCGCGUcgGCGuGCGgCGGGg -3'
miRNA:   3'- gggUCGCCCCGCGCG--CGC-UGCgGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.