miRNA display CGI


Results 21 - 40 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 3005 0.75 0.137972
Target:  5'- cCCgGGCGcGGGgGCGCgGCGG-GCCGGGc -3'
miRNA:   3'- -GGgUCGC-CCCgCGCG-CGCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 3198 0.74 0.174328
Target:  5'- cCCCGgccggcGCGGaGGCGgGCGCGGCGCUcaggcgccccaGGGc -3'
miRNA:   3'- -GGGU------CGCC-CCGCgCGCGCUGCGG-----------CCC- -5'
5193 5' -66.4 NC_001798.1 + 3268 0.74 0.151596
Target:  5'- gCCGGCGGGcaccGCGCGCucgucggccgGCGACGCCGc- -3'
miRNA:   3'- gGGUCGCCC----CGCGCG----------CGCUGCGGCcc -5'
5193 5' -66.4 NC_001798.1 + 3312 0.69 0.351406
Target:  5'- -aCGGCaacGGGGCgGCG-GCGGCGgCGGGc -3'
miRNA:   3'- ggGUCG---CCCCG-CGCgCGCUGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 3428 0.77 0.101116
Target:  5'- gCCAGCaGGGGCGCguagGCGCGGCGCaGGc -3'
miRNA:   3'- gGGUCG-CCCCGCG----CGCGCUGCGgCCc -5'
5193 5' -66.4 NC_001798.1 + 3565 0.66 0.478416
Target:  5'- cCCCAgGUGGGGCacggccCGCGCcACGCUGccGGa -3'
miRNA:   3'- -GGGU-CGCCCCGc-----GCGCGcUGCGGC--CC- -5'
5193 5' -66.4 NC_001798.1 + 3763 0.75 0.141269
Target:  5'- gCCCAGCucGGGCGCccacaCG-GGCGCCGGGg -3'
miRNA:   3'- -GGGUCGc-CCCGCGc----GCgCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 3889 0.66 0.478416
Target:  5'- cCCCGGgGGcGGgGgGC-CGGCcCCGGGc -3'
miRNA:   3'- -GGGUCgCC-CCgCgCGcGCUGcGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 3936 0.73 0.1784
Target:  5'- aCCCGucGCGGuaGCGCGCGUagaaGGCGCCGGa -3'
miRNA:   3'- -GGGU--CGCCc-CGCGCGCG----CUGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 4054 0.7 0.278399
Target:  5'- gCCCGGCGGcgcuccaGGCgGCcCGCGGuCGCCGcGGg -3'
miRNA:   3'- -GGGUCGCC-------CCG-CGcGCGCU-GCGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 4094 0.71 0.259725
Target:  5'- uCCgGGcCGGGGCGgGCuCGGCccugggcgggcucgGCCGGGg -3'
miRNA:   3'- -GGgUC-GCCCCGCgCGcGCUG--------------CGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 4218 0.76 0.128501
Target:  5'- gCUGGCgGGGGCGCGgGCGGCGUCGu- -3'
miRNA:   3'- gGGUCG-CCCCGCGCgCGCUGCGGCcc -5'
5193 5' -66.4 NC_001798.1 + 4361 0.81 0.049638
Target:  5'- gCCGGCGGGGgGCGCGcCGGCGgCGGu -3'
miRNA:   3'- gGGUCGCCCCgCGCGC-GCUGCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 4396 0.72 0.234165
Target:  5'- --uGGUGGuGGUGUcgGCGgGGCGCCGGGg -3'
miRNA:   3'- gggUCGCC-CCGCG--CGCgCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 4495 0.67 0.427993
Target:  5'- aCCCAGCGGccCGCGuCGCGGuCGUCGu- -3'
miRNA:   3'- -GGGUCGCCccGCGC-GCGCU-GCGGCcc -5'
5193 5' -66.4 NC_001798.1 + 4835 0.66 0.522566
Target:  5'- aCCCGggccGCGcGGCGgG-GCGACGguCCGGGu -3'
miRNA:   3'- -GGGU----CGCcCCGCgCgCGCUGC--GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 5244 0.72 0.209329
Target:  5'- gUCCu-CGGGGCGCGCGgGGCGggGGGa -3'
miRNA:   3'- -GGGucGCCCCGCGCGCgCUGCggCCC- -5'
5193 5' -66.4 NC_001798.1 + 5981 0.67 0.436181
Target:  5'- aCCAGgGGacaccGGC-UGCGCGGCGgagaCCGGGa -3'
miRNA:   3'- gGGUCgCC-----CCGcGCGCGCUGC----GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 6233 0.67 0.433715
Target:  5'- gCCGGcCGGGGgGaCGgGCGggggacggggggacGgGCCGGGg -3'
miRNA:   3'- gGGUC-GCCCCgC-GCgCGC--------------UgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 6369 0.68 0.365923
Target:  5'- aCgGGcCGGGGgGC-CGgGGgGCCGGGg -3'
miRNA:   3'- gGgUC-GCCCCgCGcGCgCUgCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.