miRNA display CGI


Results 21 - 40 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 43464 0.77 0.098702
Target:  5'- cCCCGcaguacGCgGGGGCGgGCGUGAgggcCGCCGGGg -3'
miRNA:   3'- -GGGU------CG-CCCCGCgCGCGCU----GCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 3428 0.77 0.101116
Target:  5'- gCCAGCaGGGGCGCguagGCGCGGCGCaGGc -3'
miRNA:   3'- gGGUCG-CCCCGCG----CGCGCUGCGgCCc -5'
5193 5' -66.4 NC_001798.1 + 78560 0.77 0.101116
Target:  5'- gCCuGCGGgaggcgcuGGcCGCGCGCGAgCGCCGGGc -3'
miRNA:   3'- gGGuCGCC--------CC-GCGCGCGCU-GCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 139367 0.77 0.103586
Target:  5'- gUCCGGCGGGGagggcuCGCGgGACGuCCGGGc -3'
miRNA:   3'- -GGGUCGCCCCgc----GCGCgCUGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 96028 0.77 0.106112
Target:  5'- aCCGGCGGGGCGgGCGgGcggGCGaCGGGc -3'
miRNA:   3'- gGGUCGCCCCGCgCGCgC---UGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 153057 0.77 0.106112
Target:  5'- gCCGGCgccgcccccuGGGGCGgGCggagcggcgggGCGGCGCCGGGc -3'
miRNA:   3'- gGGUCG----------CCCCGCgCG-----------CGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 27217 0.77 0.108696
Target:  5'- cCCCggGGCGGGGCGCGggggagGCGGCcGCgGGGg -3'
miRNA:   3'- -GGG--UCGCCCCGCGCg-----CGCUG-CGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 120494 0.76 0.114043
Target:  5'- gCCGGUgccGGaGGCGCGCGUGuuggccgugaACGCCGGGu -3'
miRNA:   3'- gGGUCG---CC-CCGCGCGCGC----------UGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 62454 0.76 0.119634
Target:  5'- gCCGGUGGGcCGCGCGaCGGCGCCcGGu -3'
miRNA:   3'- gGGUCGCCCcGCGCGC-GCUGCGGcCC- -5'
5193 5' -66.4 NC_001798.1 + 22398 0.76 0.119634
Target:  5'- cCCCGGCgagccGGGGCGCG-GCGGCGUCGa- -3'
miRNA:   3'- -GGGUCG-----CCCCGCGCgCGCUGCGGCcc -5'
5193 5' -66.4 NC_001798.1 + 136871 0.76 0.122525
Target:  5'- -aCAGCGaGGGCGUgGCGUGGCuCCGGGg -3'
miRNA:   3'- ggGUCGC-CCCGCG-CGCGCUGcGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 29377 0.76 0.124586
Target:  5'- cCCCgggGGCGGGcaccacucagggccGCGCcgGCGgGGCGCCGGGg -3'
miRNA:   3'- -GGG---UCGCCC--------------CGCG--CGCgCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 154095 0.76 0.12548
Target:  5'- -gCGcCGGGGCGCgGC-CGGCGCCGGGg -3'
miRNA:   3'- ggGUcGCCCCGCG-CGcGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 149974 0.76 0.12548
Target:  5'- gCCGaCgGGGGCGCgGCGCccgcgGACGCCGGGg -3'
miRNA:   3'- gGGUcG-CCCCGCG-CGCG-----CUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 4218 0.76 0.128501
Target:  5'- gCUGGCgGGGGCGCGgGCGGCGUCGu- -3'
miRNA:   3'- gGGUCG-CCCCGCGCgCGCUGCGGCcc -5'
5193 5' -66.4 NC_001798.1 + 36417 0.76 0.128501
Target:  5'- gCCgGGCGGGGCGgugGgGCGGgGUCGGGg -3'
miRNA:   3'- -GGgUCGCCCCGCg--CgCGCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 2961 0.76 0.128501
Target:  5'- --aGGCGGGGCGCGUcgGCGuGCGgCGGGg -3'
miRNA:   3'- gggUCGCCCCGCGCG--CGC-UGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 149631 0.75 0.131589
Target:  5'- cCCCcGCGauGGGCagguaGCGCGUGAgGCCGGGc -3'
miRNA:   3'- -GGGuCGC--CCCG-----CGCGCGCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 40154 0.75 0.134746
Target:  5'- uCCgAG-GGGGCGCGUGUcggaagagaGugGCCGGGu -3'
miRNA:   3'- -GGgUCgCCCCGCGCGCG---------CugCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 3005 0.75 0.137972
Target:  5'- cCCgGGCGcGGGgGCGCgGCGG-GCCGGGc -3'
miRNA:   3'- -GGgUCGC-CCCgCGCG-CGCUgCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.