miRNA display CGI


Results 21 - 40 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 115806 0.66 0.513602
Target:  5'- cCCUGGCgcuguguccGGuGGCGUuuCGUGACGCCcGGGg -3'
miRNA:   3'- -GGGUCG---------CC-CCGCGc-GCGCUGCGG-CCC- -5'
5193 5' -66.4 NC_001798.1 + 132913 0.66 0.513602
Target:  5'- gCCCAGCGGGaucuGCGggaGCuGCGcUGCCaGGa -3'
miRNA:   3'- -GGGUCGCCC----CGCg--CG-CGCuGCGGcCC- -5'
5193 5' -66.4 NC_001798.1 + 24182 0.66 0.513602
Target:  5'- uUCGGCuGGGGCcugGCGCacgugGCGGcCGCCGuGGc -3'
miRNA:   3'- gGGUCG-CCCCG---CGCG-----CGCU-GCGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 91630 0.66 0.513602
Target:  5'- gCCGGCcgcccGGGUGaGCGUGACGUCaaaGGGg -3'
miRNA:   3'- gGGUCGc----CCCGCgCGCGCUGCGG---CCC- -5'
5193 5' -66.4 NC_001798.1 + 138728 0.66 0.513602
Target:  5'- cCCCGGgccGGCGCGCuccgcggccccgGCGACcguggccagcuGCCGGGg -3'
miRNA:   3'- -GGGUCgccCCGCGCG------------CGCUG-----------CGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 39528 0.66 0.513602
Target:  5'- cCCCuccGCGccGCGCcucgccguGgGUGGCGCCGGGg -3'
miRNA:   3'- -GGGu--CGCccCGCG--------CgCGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 26430 0.66 0.513602
Target:  5'- cCCCcGCuGGuGCuGCGCGaCGACGCggacgCGGGc -3'
miRNA:   3'- -GGGuCGcCC-CG-CGCGC-GCUGCG-----GCCC- -5'
5193 5' -66.4 NC_001798.1 + 21949 0.66 0.513602
Target:  5'- cCCCuuugGGCGGaGCGCGgGaUGACGCgGGc -3'
miRNA:   3'- -GGG----UCGCCcCGCGCgC-GCUGCGgCCc -5'
5193 5' -66.4 NC_001798.1 + 98608 0.66 0.513602
Target:  5'- cCCCGGCGGcccccCGCGCcucgggcgGCGugGCCGcGa -3'
miRNA:   3'- -GGGUCGCCcc---GCGCG--------CGCugCGGC-Cc -5'
5193 5' -66.4 NC_001798.1 + 150925 0.66 0.510034
Target:  5'- uUCGG-GGGGCGgGCGgGACGUaguccacugcagaGGGa -3'
miRNA:   3'- gGGUCgCCCCGCgCGCgCUGCGg------------CCC- -5'
5193 5' -66.4 NC_001798.1 + 110979 0.66 0.508254
Target:  5'- aCCAG-GGacgucacgcccgucaGGCGCGCgguauGCGugGCCGcGGc -3'
miRNA:   3'- gGGUCgCC---------------CCGCGCG-----CGCugCGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 122048 0.66 0.504701
Target:  5'- gUCAGCGGGGgagcccuggGCGCGUcgGACGCgGaGGc -3'
miRNA:   3'- gGGUCGCCCCg--------CGCGCG--CUGCGgC-CC- -5'
5193 5' -66.4 NC_001798.1 + 44622 0.66 0.504701
Target:  5'- uUCGGUGGGcGCGCcCGUGGgGCCauuGGGc -3'
miRNA:   3'- gGGUCGCCC-CGCGcGCGCUgCGG---CCC- -5'
5193 5' -66.4 NC_001798.1 + 153000 0.66 0.504701
Target:  5'- gCCGgcGCGGGGCGguCGcCGgGGCGgaguCCGGGc -3'
miRNA:   3'- gGGU--CGCCCCGC--GC-GCgCUGC----GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 80241 0.66 0.504701
Target:  5'- cCCCGaccCGGGGCcuccuguucgGCaCGCGgcuggccgacugGCGCCGGGg -3'
miRNA:   3'- -GGGUc--GCCCCG----------CGcGCGC------------UGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 133714 0.66 0.502929
Target:  5'- gCCCauaAGCgggaguuuGGGGCGCGCGCuucaagcugcgcGCGCCcgcguGGGg -3'
miRNA:   3'- -GGG---UCG--------CCCCGCGCGCGc-----------UGCGG-----CCC- -5'
5193 5' -66.4 NC_001798.1 + 150694 0.66 0.495868
Target:  5'- aCCCGcGCGccuGCGCGCGCccccCGCCGGc -3'
miRNA:   3'- -GGGU-CGCcc-CGCGCGCGcu--GCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 149261 0.66 0.495868
Target:  5'- gCCGGCGcGGGCGCGCccuGCucccgaGAC-CaCGGGu -3'
miRNA:   3'- gGGUCGC-CCCGCGCG---CG------CUGcG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 100981 0.66 0.495868
Target:  5'- aCCCcG-GGGGCGUGgGCGGgGagGGGg -3'
miRNA:   3'- -GGGuCgCCCCGCGCgCGCUgCggCCC- -5'
5193 5' -66.4 NC_001798.1 + 97589 0.66 0.495868
Target:  5'- cCCCgAGCcaGGGGCGCagggGC-CGGagaGCUGGGg -3'
miRNA:   3'- -GGG-UCG--CCCCGCG----CGcGCUg--CGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.