miRNA display CGI


Results 41 - 60 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 100981 0.66 0.495868
Target:  5'- aCCCcG-GGGGCGUGgGCGGgGagGGGg -3'
miRNA:   3'- -GGGuCgCCCCGCGCgCGCUgCggCCC- -5'
5193 5' -66.4 NC_001798.1 + 149261 0.66 0.495868
Target:  5'- gCCGGCGcGGGCGCGCccuGCucccgaGAC-CaCGGGu -3'
miRNA:   3'- gGGUCGC-CCCGCGCG---CG------CUGcG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 150694 0.66 0.495868
Target:  5'- aCCCGcGCGccuGCGCGCGCccccCGCCGGc -3'
miRNA:   3'- -GGGU-CGCcc-CGCGCGCGcu--GCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 152038 0.66 0.495868
Target:  5'- cCCCAGagggucggGGGGCgGCGCaCGGCcCaCGGGg -3'
miRNA:   3'- -GGGUCg-------CCCCG-CGCGcGCUGcG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 135490 0.66 0.493231
Target:  5'- aCCC--CGGGGaCGCggacgccgcgcacgGCGCGAuccaggacgccCGCCGGGc -3'
miRNA:   3'- -GGGucGCCCC-GCG--------------CGCGCU-----------GCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 148259 0.66 0.493231
Target:  5'- cCCgCAGCcaggguaaggaGGGGCGgGCGUGGCgggcaggugugcggGCgGGGu -3'
miRNA:   3'- -GG-GUCG-----------CCCCGCgCGCGCUG--------------CGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 60356 0.66 0.487105
Target:  5'- aCCUucgugAGCuGGGGCuucgugagGCGCaGCugGACGUCGGGg -3'
miRNA:   3'- -GGG-----UCG-CCCCG--------CGCG-CG--CUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 57404 0.66 0.487105
Target:  5'- gCCAGCGGGuCGUG-GCGGuugcauCGCaCGGGc -3'
miRNA:   3'- gGGUCGCCCcGCGCgCGCU------GCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 102017 0.66 0.487105
Target:  5'- cCUUGGCGGGGUaGCGgG-GugGuuGGGc -3'
miRNA:   3'- -GGGUCGCCCCG-CGCgCgCugCggCCC- -5'
5193 5' -66.4 NC_001798.1 + 116344 0.66 0.487105
Target:  5'- gCCCGucuacGCGGcGGCGUGCaacgugGCGACgGCCGa- -3'
miRNA:   3'- -GGGU-----CGCC-CCGCGCG------CGCUG-CGGCcc -5'
5193 5' -66.4 NC_001798.1 + 117994 0.66 0.487105
Target:  5'- gCCCGcCGGGGUGC-CGCGA-GCuCGuGGa -3'
miRNA:   3'- -GGGUcGCCCCGCGcGCGCUgCG-GC-CC- -5'
5193 5' -66.4 NC_001798.1 + 43221 0.66 0.48449
Target:  5'- -gCAGgGGGGUuuggaccgacGCGUccugcaugagagccGCGAuCGCCGGGg -3'
miRNA:   3'- ggGUCgCCCCG----------CGCG--------------CGCU-GCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 123425 0.66 0.478416
Target:  5'- gCCGGgucacCGGGGCGCcccccccgacGCGCG-CGCCcccgacccGGGg -3'
miRNA:   3'- gGGUC-----GCCCCGCG----------CGCGCuGCGG--------CCC- -5'
5193 5' -66.4 NC_001798.1 + 3889 0.66 0.478416
Target:  5'- cCCCGGgGGcGGgGgGC-CGGCcCCGGGc -3'
miRNA:   3'- -GGGUCgCC-CCgCgCGcGCUGcGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 3565 0.66 0.478416
Target:  5'- cCCCAgGUGGGGCacggccCGCGCcACGCUGccGGa -3'
miRNA:   3'- -GGGU-CGCCCCGc-----GCGCGcUGCGGC--CC- -5'
5193 5' -66.4 NC_001798.1 + 33498 0.66 0.478416
Target:  5'- --aAGUGGGGCGgGgGCGAgGgCGGu -3'
miRNA:   3'- gggUCGCCCCGCgCgCGCUgCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 71478 0.67 0.47324
Target:  5'- gCCCuuGCgGGGGCGaacguguucgggcuCGCGCGggaguacgggcacuACGCCGGc -3'
miRNA:   3'- -GGGu-CG-CCCCGC--------------GCGCGC--------------UGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 90389 0.67 0.469804
Target:  5'- gCCGucGgGGGGCGCgguugggccgGCGCGuucccGCGgCCGGGc -3'
miRNA:   3'- gGGU--CgCCCCGCG----------CGCGC-----UGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 149416 0.67 0.469804
Target:  5'- gUCGG-GGGGCcucacgcaguuGCGCGCG-UGCuCGGGg -3'
miRNA:   3'- gGGUCgCCCCG-----------CGCGCGCuGCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 145386 0.67 0.469804
Target:  5'- aCCCGaggggcgacGCGGGGaaaGCGCGCcccCGCCcGGc -3'
miRNA:   3'- -GGGU---------CGCCCCg--CGCGCGcu-GCGGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.