miRNA display CGI


Results 41 - 60 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 31143 0.75 0.141269
Target:  5'- cCCCGGCGcGGGgGCG-GCGGUGCgGGGg -3'
miRNA:   3'- -GGGUCGC-CCCgCGCgCGCUGCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 3763 0.75 0.141269
Target:  5'- gCCCAGCucGGGCGCccacaCG-GGCGCCGGGg -3'
miRNA:   3'- -GGGUCGc-CCCGCGc----GCgCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 34805 0.75 0.141269
Target:  5'- gCCCGGggcccCGGGGCcccCGCGCucCGCCGGGg -3'
miRNA:   3'- -GGGUC-----GCCCCGc--GCGCGcuGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 9654 0.75 0.141269
Target:  5'- gCgCAGCGGGcCGCGCGCGGaggGCgCGGGa -3'
miRNA:   3'- -GgGUCGCCCcGCGCGCGCUg--CG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 102185 0.75 0.144638
Target:  5'- ---cGUGGGGCccggaagccugGCGCGCGgcGCGCCGGGa -3'
miRNA:   3'- ggguCGCCCCG-----------CGCGCGC--UGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 36481 0.75 0.144638
Target:  5'- gCCGGgagGGGGCGCcgGCGCGACGCgGGc -3'
miRNA:   3'- gGGUCg--CCCCGCG--CGCGCUGCGgCCc -5'
5193 5' -66.4 NC_001798.1 + 39627 0.75 0.147732
Target:  5'- gCCGGCGGGGUuuugGUGUggagucgGCGcCGCCGGGg -3'
miRNA:   3'- gGGUCGCCCCG----CGCG-------CGCuGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 3268 0.74 0.151596
Target:  5'- gCCGGCGGGcaccGCGCGCucgucggccgGCGACGCCGc- -3'
miRNA:   3'- gGGUCGCCC----CGCGCG----------CGCUGCGGCcc -5'
5193 5' -66.4 NC_001798.1 + 102496 0.74 0.155188
Target:  5'- ---uGCGGGGaCGgGC-CGGCGCCGGGg -3'
miRNA:   3'- ggguCGCCCC-GCgCGcGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 117668 0.74 0.158857
Target:  5'- aCCC-GCGGGGaCGCGCggccgGCGGCGUguacgCGGGg -3'
miRNA:   3'- -GGGuCGCCCC-GCGCG-----CGCUGCG-----GCCC- -5'
5193 5' -66.4 NC_001798.1 + 2292 0.74 0.158857
Target:  5'- gCCAGCGaGGccaGCGCGCGCGggucgaacaugaGgGCCGGGc -3'
miRNA:   3'- gGGUCGC-CC---CGCGCGCGC------------UgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 86155 0.74 0.158857
Target:  5'- aCC-GCGGGGCGCGCaugcGCGACG-CGGc -3'
miRNA:   3'- gGGuCGCCCCGCGCG----CGCUGCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 148409 0.74 0.158857
Target:  5'- gCgGGCGGGGUGgGCGcCGGgGCgGGGg -3'
miRNA:   3'- gGgUCGCCCCGCgCGC-GCUgCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 153805 0.74 0.158857
Target:  5'- -gCGGCGGGGgGCaggcggcggcagGCGCGGCGUgCGGGg -3'
miRNA:   3'- ggGUCGCCCCgCG------------CGCGCUGCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 147224 0.74 0.162605
Target:  5'- cCCCGGCGGaGCGCGgG-GGCcCCGGGg -3'
miRNA:   3'- -GGGUCGCCcCGCGCgCgCUGcGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 71092 0.74 0.162605
Target:  5'- gCCC-GCGGucGGCGUGCGCGcCcCCGGGg -3'
miRNA:   3'- -GGGuCGCC--CCGCGCGCGCuGcGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 69277 0.74 0.162605
Target:  5'- aCCUGGCGGGucaggugauaGCGgGgGGCGCCGGGg -3'
miRNA:   3'- -GGGUCGCCCcg--------CGCgCgCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 100187 0.74 0.166431
Target:  5'- gCCGGCGGGugaGCGCGCGC-AUGCuCGGa -3'
miRNA:   3'- gGGUCGCCC---CGCGCGCGcUGCG-GCCc -5'
5193 5' -66.4 NC_001798.1 + 2502 0.74 0.166431
Target:  5'- gCC-GCGGGGCGCGgcggcCGCGGCGgCGGc -3'
miRNA:   3'- gGGuCGCCCCGCGC-----GCGCUGCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 26359 0.74 0.166431
Target:  5'- gCCCGGCGGagcuGCGCGgGCcGCGgCGGGa -3'
miRNA:   3'- -GGGUCGCCc---CGCGCgCGcUGCgGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.