miRNA display CGI


Results 41 - 60 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 15552 0.66 0.522566
Target:  5'- gCCCGGCcccGGGCGuUGC-CGcCGCCGcGGc -3'
miRNA:   3'- -GGGUCGc--CCCGC-GCGcGCuGCGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 53659 0.66 0.522566
Target:  5'- --uGGCGGGGU-UGCGCGACG-CGGc -3'
miRNA:   3'- gggUCGCCCCGcGCGCGCUGCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 23932 0.66 0.521667
Target:  5'- cCCCGGCGcccguguGGGCGCcgagcuGgGCGACG-CGGc -3'
miRNA:   3'- -GGGUCGC-------CCCGCG------CgCGCUGCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 138728 0.66 0.513602
Target:  5'- cCCCGGgccGGCGCGCuccgcggccccgGCGACcguggccagcuGCCGGGg -3'
miRNA:   3'- -GGGUCgccCCGCGCG------------CGCUG-----------CGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 14043 0.66 0.513602
Target:  5'- gCCCGGCacGGGGCGUGUGgCGACaaCCa-- -3'
miRNA:   3'- -GGGUCG--CCCCGCGCGC-GCUGc-GGccc -5'
5193 5' -66.4 NC_001798.1 + 53963 0.66 0.513602
Target:  5'- gCCCuGCGGGcG-GCGgucaGCGACGuCCuGGGc -3'
miRNA:   3'- -GGGuCGCCC-CgCGCg---CGCUGC-GG-CCC- -5'
5193 5' -66.4 NC_001798.1 + 71407 0.66 0.513602
Target:  5'- --uGGCGGGGgugccCGCGCG-GACGCCccccggccacGGGc -3'
miRNA:   3'- gggUCGCCCC-----GCGCGCgCUGCGG----------CCC- -5'
5193 5' -66.4 NC_001798.1 + 115806 0.66 0.513602
Target:  5'- cCCUGGCgcuguguccGGuGGCGUuuCGUGACGCCcGGGg -3'
miRNA:   3'- -GGGUCG---------CC-CCGCGc-GCGCUGCGG-CCC- -5'
5193 5' -66.4 NC_001798.1 + 132913 0.66 0.513602
Target:  5'- gCCCAGCGGGaucuGCGggaGCuGCGcUGCCaGGa -3'
miRNA:   3'- -GGGUCGCCC----CGCg--CG-CGCuGCGGcCC- -5'
5193 5' -66.4 NC_001798.1 + 24182 0.66 0.513602
Target:  5'- uUCGGCuGGGGCcugGCGCacgugGCGGcCGCCGuGGc -3'
miRNA:   3'- gGGUCG-CCCCG---CGCG-----CGCU-GCGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 91630 0.66 0.513602
Target:  5'- gCCGGCcgcccGGGUGaGCGUGACGUCaaaGGGg -3'
miRNA:   3'- gGGUCGc----CCCGCgCGCGCUGCGG---CCC- -5'
5193 5' -66.4 NC_001798.1 + 98608 0.66 0.513602
Target:  5'- cCCCGGCGGcccccCGCGCcucgggcgGCGugGCCGcGa -3'
miRNA:   3'- -GGGUCGCCcc---GCGCG--------CGCugCGGC-Cc -5'
5193 5' -66.4 NC_001798.1 + 21949 0.66 0.513602
Target:  5'- cCCCuuugGGCGGaGCGCGgGaUGACGCgGGc -3'
miRNA:   3'- -GGG----UCGCCcCGCGCgC-GCUGCGgCCc -5'
5193 5' -66.4 NC_001798.1 + 26430 0.66 0.513602
Target:  5'- cCCCcGCuGGuGCuGCGCGaCGACGCggacgCGGGc -3'
miRNA:   3'- -GGGuCGcCC-CG-CGCGC-GCUGCG-----GCCC- -5'
5193 5' -66.4 NC_001798.1 + 39528 0.66 0.513602
Target:  5'- cCCCuccGCGccGCGCcucgccguGgGUGGCGCCGGGg -3'
miRNA:   3'- -GGGu--CGCccCGCG--------CgCGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 130761 0.66 0.519871
Target:  5'- gCCCGcacCGGaccgacgauacgauGGUGCGU-CGGCGCCGGGu -3'
miRNA:   3'- -GGGUc--GCC--------------CCGCGCGcGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 71478 0.67 0.47324
Target:  5'- gCCCuuGCgGGGGCGaacguguucgggcuCGCGCGggaguacgggcacuACGCCGGc -3'
miRNA:   3'- -GGGu-CG-CCCCGC--------------GCGCGC--------------UGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 90389 0.67 0.469804
Target:  5'- gCCGucGgGGGGCGCgguugggccgGCGCGuucccGCGgCCGGGc -3'
miRNA:   3'- gGGU--CgCCCCGCG----------CGCGC-----UGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 149416 0.67 0.469804
Target:  5'- gUCGG-GGGGCcucacgcaguuGCGCGCG-UGCuCGGGg -3'
miRNA:   3'- gGGUCgCCCCG-----------CGCGCGCuGCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 145386 0.67 0.469804
Target:  5'- aCCCGaggggcgacGCGGGGaaaGCGCGCcccCGCCcGGc -3'
miRNA:   3'- -GGGU---------CGCCCCg--CGCGCGcu-GCGGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.