miRNA display CGI


Results 41 - 60 of 343 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 7186 0.67 0.452822
Target:  5'- cCCCGcacCGGGGCG-GCGaccaugaucCGGCGgCGGGg -3'
miRNA:   3'- -GGGUc--GCCCCGCgCGC---------GCUGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 9143 0.71 0.267185
Target:  5'- -gCGGCacgcGGGCGCgGCGCcgcccGCGCCGGGg -3'
miRNA:   3'- ggGUCGc---CCCGCG-CGCGc----UGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 9654 0.75 0.141269
Target:  5'- gCgCAGCGGGcCGCGCGCGGaggGCgCGGGa -3'
miRNA:   3'- -GgGUCGCCCcGCGCGCGCUg--CG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 10287 0.66 0.495868
Target:  5'- gUCGGgGGGGCGacgGgGgGACGaCGGGg -3'
miRNA:   3'- gGGUCgCCCCGCg--CgCgCUGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 11753 0.67 0.436181
Target:  5'- uCCCAggcGCGGGGC-CGaaaagggaaGCuGCGCCGGa -3'
miRNA:   3'- -GGGU---CGCCCCGcGCg--------CGcUGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 12558 0.67 0.451982
Target:  5'- gCgAGgGGGGCGCGuCGUcaucccgGAUGUgGGGg -3'
miRNA:   3'- gGgUCgCCCCGCGC-GCG-------CUGCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 12716 0.7 0.279
Target:  5'- -gCGGCgGGGGCGUggugcgGCGCGACGUccuggaucgaCGGGa -3'
miRNA:   3'- ggGUCG-CCCCGCG------CGCGCUGCG----------GCCC- -5'
5193 5' -66.4 NC_001798.1 + 13237 0.68 0.373335
Target:  5'- cUCCAGCGGGGCuGCGUuCGGa--UGGGg -3'
miRNA:   3'- -GGGUCGCCCCG-CGCGcGCUgcgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 13675 0.69 0.344302
Target:  5'- aCUAGCaGGGC-CGCcguccCGACGCCGGa -3'
miRNA:   3'- gGGUCGcCCCGcGCGc----GCUGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 14043 0.66 0.513602
Target:  5'- gCCCGGCacGGGGCGUGUGgCGACaaCCa-- -3'
miRNA:   3'- -GGGUCG--CCCCGCGCGC-GCUGc-GGccc -5'
5193 5' -66.4 NC_001798.1 + 15034 0.71 0.23889
Target:  5'- uCCUGGCGGGaGCGUGgggcggaugggccCGgGGCGCgCGGGg -3'
miRNA:   3'- -GGGUCGCCC-CGCGC-------------GCgCUGCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 15150 0.67 0.441965
Target:  5'- cCCCGGCGcccucaaacuccucGGGUcCGcCGCGAUGuUCGGGg -3'
miRNA:   3'- -GGGUCGC--------------CCCGcGC-GCGCUGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 15442 0.67 0.444458
Target:  5'- cCCCggagucguggGGCGGGGgGuCGCGUggguaGACGUgggCGGGg -3'
miRNA:   3'- -GGG----------UCGCCCCgC-GCGCG-----CUGCG---GCCC- -5'
5193 5' -66.4 NC_001798.1 + 15552 0.66 0.522566
Target:  5'- gCCCGGCcccGGGCGuUGC-CGcCGCCGcGGc -3'
miRNA:   3'- -GGGUCGc--CCCGC-GCGcGCuGCGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 15834 0.67 0.436181
Target:  5'- gCCCGGUucGGGGgGCcCGa-ACGUCGGGg -3'
miRNA:   3'- -GGGUCG--CCCCgCGcGCgcUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 16162 0.67 0.461272
Target:  5'- aCCgAGCGccacGGGCgGCcCGCGGgGaCCGGGg -3'
miRNA:   3'- -GGgUCGC----CCCG-CGcGCGCUgC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 16225 0.69 0.358613
Target:  5'- gCCuGUgGGGGgGCG-GUGGgGCCGGGg -3'
miRNA:   3'- gGGuCG-CCCCgCGCgCGCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 16608 0.67 0.444458
Target:  5'- gCCCA--GGGGCuCGUGaCGgacgacGCGCCGGGg -3'
miRNA:   3'- -GGGUcgCCCCGcGCGC-GC------UGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 16832 0.72 0.234165
Target:  5'- aCCUgggAGCGauGGCGUGCaUGACGCCGGGc -3'
miRNA:   3'- -GGG---UCGCc-CCGCGCGcGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 17232 0.66 0.522566
Target:  5'- gCCUuuCGGGGU-CGCGCGGgGCCGa- -3'
miRNA:   3'- -GGGucGCCCCGcGCGCGCUgCGGCcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.