Results 41 - 60 of 343 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5193 | 5' | -66.4 | NC_001798.1 | + | 4835 | 0.66 | 0.522566 |
Target: 5'- aCCCGggccGCGcGGCGgG-GCGACGguCCGGGu -3' miRNA: 3'- -GGGU----CGCcCCGCgCgCGCUGC--GGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 36273 | 0.66 | 0.522566 |
Target: 5'- cCCCGGgGuGGGCG-GCGgGGgggggUGCCGuGGg -3' miRNA: 3'- -GGGUCgC-CCCGCgCGCgCU-----GCGGC-CC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 58195 | 0.66 | 0.522566 |
Target: 5'- cCCCAGCau--CGCGUauacgGCGAUGUCGGGg -3' miRNA: 3'- -GGGUCGccccGCGCG-----CGCUGCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 83885 | 0.66 | 0.522566 |
Target: 5'- cCCCGGCccGGGCGCuccggaagagugGUGCGcCGCCGc- -3' miRNA: 3'- -GGGUCGc-CCCGCG------------CGCGCuGCGGCcc -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 87378 | 0.66 | 0.522566 |
Target: 5'- aUCCuGCgcggagGGGGgGCGUGCGACccCCGGu -3' miRNA: 3'- -GGGuCG------CCCCgCGCGCGCUGc-GGCCc -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 23932 | 0.66 | 0.521667 |
Target: 5'- cCCCGGCGcccguguGGGCGCcgagcuGgGCGACG-CGGc -3' miRNA: 3'- -GGGUCGC-------CCCGCG------CgCGCUGCgGCCc -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 130761 | 0.66 | 0.519871 |
Target: 5'- gCCCGcacCGGaccgacgauacgauGGUGCGU-CGGCGCCGGGu -3' miRNA: 3'- -GGGUc--GCC--------------CCGCGCGcGCUGCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 14043 | 0.66 | 0.513602 |
Target: 5'- gCCCGGCacGGGGCGUGUGgCGACaaCCa-- -3' miRNA: 3'- -GGGUCG--CCCCGCGCGC-GCUGc-GGccc -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 1506 | 0.66 | 0.513602 |
Target: 5'- gCCCgaGGCGGcGGCccgGC-CGUccaGCGCCGGGa -3' miRNA: 3'- -GGG--UCGCC-CCG---CGcGCGc--UGCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 53963 | 0.66 | 0.513602 |
Target: 5'- gCCCuGCGGGcG-GCGgucaGCGACGuCCuGGGc -3' miRNA: 3'- -GGGuCGCCC-CgCGCg---CGCUGC-GG-CCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 71407 | 0.66 | 0.513602 |
Target: 5'- --uGGCGGGGgugccCGCGCG-GACGCCccccggccacGGGc -3' miRNA: 3'- gggUCGCCCC-----GCGCGCgCUGCGG----------CCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 115806 | 0.66 | 0.513602 |
Target: 5'- cCCUGGCgcuguguccGGuGGCGUuuCGUGACGCCcGGGg -3' miRNA: 3'- -GGGUCG---------CC-CCGCGc-GCGCUGCGG-CCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 132913 | 0.66 | 0.513602 |
Target: 5'- gCCCAGCGGGaucuGCGggaGCuGCGcUGCCaGGa -3' miRNA: 3'- -GGGUCGCCC----CGCg--CG-CGCuGCGGcCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 24182 | 0.66 | 0.513602 |
Target: 5'- uUCGGCuGGGGCcugGCGCacgugGCGGcCGCCGuGGc -3' miRNA: 3'- gGGUCG-CCCCG---CGCG-----CGCU-GCGGC-CC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 91630 | 0.66 | 0.513602 |
Target: 5'- gCCGGCcgcccGGGUGaGCGUGACGUCaaaGGGg -3' miRNA: 3'- gGGUCGc----CCCGCgCGCGCUGCGG---CCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 98608 | 0.66 | 0.513602 |
Target: 5'- cCCCGGCGGcccccCGCGCcucgggcgGCGugGCCGcGa -3' miRNA: 3'- -GGGUCGCCcc---GCGCG--------CGCugCGGC-Cc -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 21949 | 0.66 | 0.513602 |
Target: 5'- cCCCuuugGGCGGaGCGCGgGaUGACGCgGGc -3' miRNA: 3'- -GGG----UCGCCcCGCGCgC-GCUGCGgCCc -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 26430 | 0.66 | 0.513602 |
Target: 5'- cCCCcGCuGGuGCuGCGCGaCGACGCggacgCGGGc -3' miRNA: 3'- -GGGuCGcCC-CG-CGCGC-GCUGCG-----GCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 39528 | 0.66 | 0.513602 |
Target: 5'- cCCCuccGCGccGCGCcucgccguGgGUGGCGCCGGGg -3' miRNA: 3'- -GGGu--CGCccCGCG--------CgCGCUGCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 138728 | 0.66 | 0.513602 |
Target: 5'- cCCCGGgccGGCGCGCuccgcggccccgGCGACcguggccagcuGCCGGGg -3' miRNA: 3'- -GGGUCgccCCGCGCG------------CGCUG-----------CGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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