miRNA display CGI


Results 61 - 80 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 135708 0.67 0.469804
Target:  5'- cUCC-GCGGGGC-CGCGU-ACGCCcGGc -3'
miRNA:   3'- -GGGuCGCCCCGcGCGCGcUGCGGcCC- -5'
5193 5' -66.4 NC_001798.1 + 145386 0.67 0.469804
Target:  5'- aCCCGaggggcgacGCGGGGaaaGCGCGCcccCGCCcGGc -3'
miRNA:   3'- -GGGU---------CGCCCCg--CGCGCGcu-GCGGcCC- -5'
5193 5' -66.4 NC_001798.1 + 149416 0.67 0.469804
Target:  5'- gUCGG-GGGGCcucacgcaguuGCGCGCG-UGCuCGGGg -3'
miRNA:   3'- gGGUCgCCCCG-----------CGCGCGCuGCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 90389 0.67 0.469804
Target:  5'- gCCGucGgGGGGCGCgguugggccgGCGCGuucccGCGgCCGGGc -3'
miRNA:   3'- gGGU--CgCCCCGCG----------CGCGC-----UGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 34924 0.67 0.468091
Target:  5'- gCCucCGGGGCcccuuucGCgccuuucgcgaacGCGCGGCGCCGGa -3'
miRNA:   3'- gGGucGCCCCG-------CG-------------CGCGCUGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 1576 0.67 0.461272
Target:  5'- aCCAGCgugucGGGGCcgaaGCGCGUG-CGCaCGcGGu -3'
miRNA:   3'- gGGUCG-----CCCCG----CGCGCGCuGCG-GC-CC- -5'
5193 5' -66.4 NC_001798.1 + 45183 0.67 0.461272
Target:  5'- aCCAucGaCGGGGC-CGuUGCGGCGCauCGGGa -3'
miRNA:   3'- gGGU--C-GCCCCGcGC-GCGCUGCG--GCCC- -5'
5193 5' -66.4 NC_001798.1 + 69002 0.67 0.461272
Target:  5'- cCUCGGCGGcgucGCGCGCaucguaggcgGCGGCGCaCGcGGc -3'
miRNA:   3'- -GGGUCGCCc---CGCGCG----------CGCUGCG-GC-CC- -5'
5193 5' -66.4 NC_001798.1 + 100708 0.67 0.461272
Target:  5'- gCCAuguucGCGGGGCuGUGCGCGuucuuCGagGGGa -3'
miRNA:   3'- gGGU-----CGCCCCG-CGCGCGCu----GCggCCC- -5'
5193 5' -66.4 NC_001798.1 + 1336 0.67 0.461272
Target:  5'- uCCCGccGCGGccCGCGCaGCucCGCCGGGc -3'
miRNA:   3'- -GGGU--CGCCccGCGCG-CGcuGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 16162 0.67 0.461272
Target:  5'- aCCgAGCGccacGGGCgGCcCGCGGgGaCCGGGg -3'
miRNA:   3'- -GGgUCGC----CCCG-CGcGCGCUgC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 43642 0.67 0.461272
Target:  5'- aCCCaggGGCGaGGGCugcuccgugcugGC-CGCGGgGCUGGGg -3'
miRNA:   3'- -GGG---UCGC-CCCG------------CGcGCGCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 58691 0.67 0.461272
Target:  5'- gCCGuCaGGGcCGCG-GCGGCGCgGGGg -3'
miRNA:   3'- gGGUcGcCCC-GCGCgCGCUGCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 102638 0.67 0.461272
Target:  5'- uCCCGucGCcGGGCG-GCGgaGGgGCCGGGg -3'
miRNA:   3'- -GGGU--CGcCCCGCgCGCg-CUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 143809 0.67 0.461272
Target:  5'- aCCAGgcccGGGCgGCGCGCGGCcaGCCGuuGGa -3'
miRNA:   3'- gGGUCgc--CCCG-CGCGCGCUG--CGGC--CC- -5'
5193 5' -66.4 NC_001798.1 + 97805 0.67 0.460423
Target:  5'- gCCAacggcuucGCGGcGCGCGCGCGcuucugcgcccugACGgCGGGc -3'
miRNA:   3'- gGGU--------CGCCcCGCGCGCGC-------------UGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 42734 0.67 0.456192
Target:  5'- aCCGGcCGaGGGCcCGUcgcccgcacagacggGCGGCGCgCGGGg -3'
miRNA:   3'- gGGUC-GC-CCCGcGCG---------------CGCUGCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 97253 0.67 0.453663
Target:  5'- -gCGGCGGGcggagcacuucgaucGCGCGUucgggggccaccugGCGGCGCUGGa -3'
miRNA:   3'- ggGUCGCCC---------------CGCGCG--------------CGCUGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 91065 0.67 0.452822
Target:  5'- cCCgCAGUacaccuuaGGGGCGCGCcggagGCGGcCGUCGuGGa -3'
miRNA:   3'- -GG-GUCG--------CCCCGCGCG-----CGCU-GCGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 154122 0.67 0.452822
Target:  5'- cCCCGGCGGcggggaccccGGCG-GCGgGACauggcgggcgGCUGGGc -3'
miRNA:   3'- -GGGUCGCC----------CCGCgCGCgCUG----------CGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.