miRNA display CGI


Results 21 - 40 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 150155 0.67 0.419092
Target:  5'- aCCCGcGCcucuuccgGGGGCGgGCcgccgcccccuccGCGGCGUgGGGg -3'
miRNA:   3'- -GGGU-CG--------CCCCGCgCG-------------CGCUGCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 150081 0.71 0.261431
Target:  5'- cCCCuGgGGGGCGagGgGCGAgCGCgGGGc -3'
miRNA:   3'- -GGGuCgCCCCGCg-CgCGCU-GCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 150037 0.68 0.388462
Target:  5'- uCCgAGUccGGGGCcCgGCGCGGCGCCGc- -3'
miRNA:   3'- -GGgUCG--CCCCGcG-CGCGCUGCGGCcc -5'
5193 5' -66.4 NC_001798.1 + 149974 0.76 0.12548
Target:  5'- gCCGaCgGGGGCGCgGCGCccgcgGACGCCGGGg -3'
miRNA:   3'- gGGUcG-CCCCGCG-CGCG-----CUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 149631 0.75 0.131589
Target:  5'- cCCCcGCGauGGGCagguaGCGCGUGAgGCCGGGc -3'
miRNA:   3'- -GGGuCGC--CCCG-----CGCGCGCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 149416 0.67 0.469804
Target:  5'- gUCGG-GGGGCcucacgcaguuGCGCGCG-UGCuCGGGg -3'
miRNA:   3'- gGGUCgCCCCG-----------CGCGCGCuGCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 149261 0.66 0.495868
Target:  5'- gCCGGCGcGGGCGCGCccuGCucccgaGAC-CaCGGGu -3'
miRNA:   3'- gGGUCGC-CCCGCGCG---CG------CUGcG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 148409 0.74 0.158857
Target:  5'- gCgGGCGGGGUGgGCGcCGGgGCgGGGg -3'
miRNA:   3'- gGgUCGCCCCGCgCGC-GCUgCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 148367 0.69 0.358613
Target:  5'- uCCCAGCcagggugaggaGGGGCGgGCGUGGCGggcaGGu -3'
miRNA:   3'- -GGGUCG-----------CCCCGCgCGCGCUGCgg--CCc -5'
5193 5' -66.4 NC_001798.1 + 148259 0.66 0.493231
Target:  5'- cCCgCAGCcaggguaaggaGGGGCGgGCGUGGCgggcaggugugcggGCgGGGu -3'
miRNA:   3'- -GG-GUCG-----------CCCCGCgCGCGCUG--------------CGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 147907 0.73 0.204642
Target:  5'- uCCCGGgGGGGCaG-GCGCGG-GUCGGGc -3'
miRNA:   3'- -GGGUCgCCCCG-CgCGCGCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 147224 0.74 0.162605
Target:  5'- cCCCGGCGGaGCGCGgG-GGCcCCGGGg -3'
miRNA:   3'- -GGGUCGCCcCGCGCgCgCUGcGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 147150 0.72 0.209329
Target:  5'- uCCCGGCcgGGGGUcccggguaGcCGCcCGGCGCCGGGc -3'
miRNA:   3'- -GGGUCG--CCCCG--------C-GCGcGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 147076 0.66 0.522566
Target:  5'- cCUCGGCGGccgcccccuccGGCGcCGCGCGuucgcgaaagGCGCgaaaGGGg -3'
miRNA:   3'- -GGGUCGCC-----------CCGC-GCGCGC----------UGCGg---CCC- -5'
5193 5' -66.4 NC_001798.1 + 146292 0.7 0.285061
Target:  5'- gCCgAGCGGGGaGUGgGCG--GCCGGGc -3'
miRNA:   3'- -GGgUCGCCCCgCGCgCGCugCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 145914 0.71 0.273041
Target:  5'- aCCGGCGGGauCGCG-GCGAgacgcaGCCGGGc -3'
miRNA:   3'- gGGUCGCCCc-GCGCgCGCUg-----CGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 145805 0.69 0.358613
Target:  5'- gCgGGCGgcagaaacgcGGGCGCG-GCGGCGgUCGGGg -3'
miRNA:   3'- gGgUCGC----------CCCGCGCgCGCUGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 145640 0.68 0.396175
Target:  5'- gCCCGGCaGGGGgGCcC-CGGCGCCGc- -3'
miRNA:   3'- -GGGUCG-CCCCgCGcGcGCUGCGGCcc -5'
5193 5' -66.4 NC_001798.1 + 145386 0.67 0.469804
Target:  5'- aCCCGaggggcgacGCGGGGaaaGCGCGCcccCGCCcGGc -3'
miRNA:   3'- -GGGU---------CGCCCCg--CGCGCGcu-GCGGcCC- -5'
5193 5' -66.4 NC_001798.1 + 144396 0.67 0.427993
Target:  5'- gCCCGGCGGacaGCcucuaGgGCGaCGACGCUGGa -3'
miRNA:   3'- -GGGUCGCCc--CG-----CgCGC-GCUGCGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.