miRNA display CGI


Results 1 - 20 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 154485 0.67 0.419092
Target:  5'- cCCCcGC-GGGCGCcgccccuccccccGCGCGcCGCgGGGc -3'
miRNA:   3'- -GGGuCGcCCCGCG-------------CGCGCuGCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 154393 0.69 0.358613
Target:  5'- --gGGgGGGGCGCGaaggcgggcgGCGGCGgCGGGc -3'
miRNA:   3'- gggUCgCCCCGCGCg---------CGCUGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 154270 0.71 0.273041
Target:  5'- uCCCGGCu-GGCGUGCGCaGC-CCGGGc -3'
miRNA:   3'- -GGGUCGccCCGCGCGCGcUGcGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 154122 0.67 0.452822
Target:  5'- cCCCGGCGGcggggaccccGGCG-GCGgGACauggcgggcgGCUGGGc -3'
miRNA:   3'- -GGGUCGCC----------CCGCgCGCgCUG----------CGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 154095 0.76 0.12548
Target:  5'- -gCGcCGGGGCGCgGC-CGGCGCCGGGg -3'
miRNA:   3'- ggGUcGCCCCGCG-CGcGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 154035 0.67 0.419092
Target:  5'- -gCGGuUGGGaGCGCGCcgggGCGcggcacggcuggaGCGCCGGGg -3'
miRNA:   3'- ggGUC-GCCC-CGCGCG----CGC-------------UGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 153805 0.74 0.158857
Target:  5'- -gCGGCGGGGgGCaggcggcggcagGCGCGGCGUgCGGGg -3'
miRNA:   3'- ggGUCGCCCCgCG------------CGCGCUGCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 153662 0.68 0.396175
Target:  5'- uCCC-GCGcGGCGCGUccgcgggcgGgGACGCgGGGg -3'
miRNA:   3'- -GGGuCGCcCCGCGCG---------CgCUGCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 153236 0.67 0.451982
Target:  5'- gCCC-GCGGcGGCGgaggaccCGCGCGcCGCCGc- -3'
miRNA:   3'- -GGGuCGCC-CCGC-------GCGCGCuGCGGCcc -5'
5193 5' -66.4 NC_001798.1 + 153057 0.77 0.106112
Target:  5'- gCCGGCgccgcccccuGGGGCGgGCggagcggcgggGCGGCGCCGGGc -3'
miRNA:   3'- gGGUCG----------CCCCGCgCG-----------CGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 153000 0.66 0.504701
Target:  5'- gCCGgcGCGGGGCGguCGcCGgGGCGgaguCCGGGc -3'
miRNA:   3'- gGGU--CGCCCCGC--GC-GCgCUGC----GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 152232 0.68 0.388462
Target:  5'- gCC-GCGGcGGC-CGCuCGGgGCCGGGg -3'
miRNA:   3'- gGGuCGCC-CCGcGCGcGCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 152038 0.66 0.495868
Target:  5'- cCCCAGagggucggGGGGCgGCGCaCGGCcCaCGGGg -3'
miRNA:   3'- -GGGUCg-------CCCCG-CGCGcGCUGcG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 151209 0.68 0.380849
Target:  5'- cCCCAGCGacaGGGaGCGCGgGGcCGuCCGcGGg -3'
miRNA:   3'- -GGGUCGC---CCCgCGCGCgCU-GC-GGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 150925 0.66 0.510034
Target:  5'- uUCGG-GGGGCGgGCGgGACGUaguccacugcagaGGGa -3'
miRNA:   3'- gGGUCgCCCCGCgCGCgCUGCGg------------CCC- -5'
5193 5' -66.4 NC_001798.1 + 150831 0.72 0.223945
Target:  5'- cUCC-GCGGGGCGCcagGgGGCGCCGGu -3'
miRNA:   3'- -GGGuCGCCCCGCGcg-CgCUGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 150694 0.66 0.495868
Target:  5'- aCCCGcGCGccuGCGCGCGCccccCGCCGGc -3'
miRNA:   3'- -GGGU-CGCcc-CGCGCGCGcu--GCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 150573 0.79 0.071899
Target:  5'- gCCC-GCGGGGCgGCGCGgaGACGgCGGGg -3'
miRNA:   3'- -GGGuCGCCCCG-CGCGCg-CUGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 150466 0.73 0.200047
Target:  5'- gCCGcGCGGGG-GCGCGCGGCGCg--- -3'
miRNA:   3'- gGGU-CGCCCCgCGCGCGCUGCGgccc -5'
5193 5' -66.4 NC_001798.1 + 150415 0.7 0.303868
Target:  5'- aCCAcgGGGGCgGCG-GCGGCGCgGGGc -3'
miRNA:   3'- gGGUcgCCCCG-CGCgCGCUGCGgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.