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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5194 | 3' | -65 | NC_001798.1 | + | 130162 | 0.67 | 0.434991 |
Target: 5'- --aUCGGGUCCCCGUcggaaUCCccauaCCGGUCg -3' miRNA: 3'- aacGGCCCGGGGGCA-----AGGac---GGCCAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 130449 | 0.67 | 0.443593 |
Target: 5'- -cGuCUGGGCCCCCGgccaCUGCUGcUCc -3' miRNA: 3'- aaC-GGCCCGGGGGCaag-GACGGCcAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 135534 | 0.67 | 0.409778 |
Target: 5'- -cGCCGGGCCCUCGaggcgUCCgugcgcGCCGu-- -3' miRNA: 3'- aaCGGCCCGGGGGCa----AGGa-----CGGCcag -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 137919 | 0.66 | 0.478922 |
Target: 5'- -cGCCGGGCggCCCGcgCCUcccccggccGCCcGGUCc -3' miRNA: 3'- aaCGGCCCGg-GGGCaaGGA---------CGG-CCAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 146476 | 0.66 | 0.478922 |
Target: 5'- -cGCCgcGGGCUCCgGggCCggGCCGGg- -3' miRNA: 3'- aaCGG--CCCGGGGgCaaGGa-CGGCCag -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 146625 | 0.67 | 0.426487 |
Target: 5'- -cGCCGcauuaGGCCCCCGcgggcaUCCggcgGCCGGcCc -3' miRNA: 3'- aaCGGC-----CCGGGGGCa-----AGGa---CGGCCaG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 147004 | 0.68 | 0.393484 |
Target: 5'- cUUGCCucgGGGaCCCCCGggCggGCCGGg- -3' miRNA: 3'- -AACGG---CCC-GGGGGCaaGgaCGGCCag -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 147244 | 0.67 | 0.409778 |
Target: 5'- --cCCGGGgCCCCGggCCgcGCCGG-Cg -3' miRNA: 3'- aacGGCCCgGGGGCaaGGa-CGGCCaG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 152273 | 0.67 | 0.426487 |
Target: 5'- gUGCCGGGCCgggGUUCCaugaGCCGGg- -3' miRNA: 3'- aACGGCCCGGgggCAAGGa---CGGCCag -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 152380 | 0.72 | 0.192676 |
Target: 5'- -cGCCGGGCCgCCGcUCCgucgcucgcagUGCCGGg- -3' miRNA: 3'- aaCGGCCCGGgGGCaAGG-----------ACGGCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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