miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 3' -65 NC_001798.1 + 53841 0.66 0.469957
Target:  5'- -cGCCuGGGCCCCg---CCgaucGCCGGUUc -3'
miRNA:   3'- aaCGG-CCCGGGGgcaaGGa---CGGCCAG- -5'
5194 3' -65 NC_001798.1 + 59881 0.69 0.311011
Target:  5'- -gGUCGGGCCggCCCGagagUCCUGggacgccaagcucCCGGUCg -3'
miRNA:   3'- aaCGGCCCGG--GGGCa---AGGAC-------------GGCCAG- -5'
5194 3' -65 NC_001798.1 + 67579 0.67 0.401578
Target:  5'- --cUCGGGCUCCCGggguUCCUGUCGuUCg -3'
miRNA:   3'- aacGGCCCGGGGGCa---AGGACGGCcAG- -5'
5194 3' -65 NC_001798.1 + 69331 0.68 0.362183
Target:  5'- -cGCCGGGCUCCCcugaggaucuuGUccacggCCUGCuCGGUa -3'
miRNA:   3'- aaCGGCCCGGGGG-----------CAa-----GGACG-GCCAg -5'
5194 3' -65 NC_001798.1 + 73243 0.66 0.478021
Target:  5'- -gGCCcggGGGCCCCCGgggaCCUggaggcccaagauGCCGG-Cg -3'
miRNA:   3'- aaCGG---CCCGGGGGCaa--GGA-------------CGGCCaG- -5'
5194 3' -65 NC_001798.1 + 75962 0.66 0.469957
Target:  5'- -cGCCGGGCCCCUGa-CCgugaUGCCcGUg -3'
miRNA:   3'- aaCGGCCCGGGGGCaaGG----ACGGcCAg -5'
5194 3' -65 NC_001798.1 + 77086 0.66 0.461079
Target:  5'- -cGCCGacGCCCCCGagaC-GCCGGUCc -3'
miRNA:   3'- aaCGGCc-CGGGGGCaagGaCGGCCAG- -5'
5194 3' -65 NC_001798.1 + 77435 0.68 0.369844
Target:  5'- -cGCCGGGCCUgCGc-CCaGCCGGa- -3'
miRNA:   3'- aaCGGCCCGGGgGCaaGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 79986 0.74 0.155145
Target:  5'- -cGCCGGGCCCCCGggggUCCcagcGCCacugcGUCg -3'
miRNA:   3'- aaCGGCCCGGGGGCa---AGGa---CGGc----CAG- -5'
5194 3' -65 NC_001798.1 + 80946 0.67 0.413087
Target:  5'- -cGCCgacGGGCCCCCGUgccugguccUCgUGgacaucuccaugaccCCGGUCg -3'
miRNA:   3'- aaCGG---CCCGGGGGCA---------AGgAC---------------GGCCAG- -5'
5194 3' -65 NC_001798.1 + 86916 0.76 0.112576
Target:  5'- -cGCCGGGCCuCCCGcaagagCCUGCCG-UCg -3'
miRNA:   3'- aaCGGCCCGG-GGGCaa----GGACGGCcAG- -5'
5194 3' -65 NC_001798.1 + 91365 0.74 0.150305
Target:  5'- -aGCCGGGCCgCCCGcggcacaaaacaucgCC-GCCGGUCg -3'
miRNA:   3'- aaCGGCCCGG-GGGCaa-------------GGaCGGCCAG- -5'
5194 3' -65 NC_001798.1 + 92163 1.06 0.00061
Target:  5'- cUUGCCGGGCCCCCGUUCCUGCCGGUCg -3'
miRNA:   3'- -AACGGCCCGGGGGCAAGGACGGCCAG- -5'
5194 3' -65 NC_001798.1 + 102369 0.68 0.362183
Target:  5'- -cGCCGGaaGCCCaCCcg-CCUGgCGGUCg -3'
miRNA:   3'- aaCGGCC--CGGG-GGcaaGGACgGCCAG- -5'
5194 3' -65 NC_001798.1 + 111735 0.67 0.434991
Target:  5'- -cGCUuGGCCCCCGcgCCcccgGCCccGGUCc -3'
miRNA:   3'- aaCGGcCCGGGGGCaaGGa---CGG--CCAG- -5'
5194 3' -65 NC_001798.1 + 111781 0.71 0.254886
Target:  5'- -gGCgCGGGUgCCCGUgaucacgacaUCCgugcGCCGGUCg -3'
miRNA:   3'- aaCG-GCCCGgGGGCA----------AGGa---CGGCCAG- -5'
5194 3' -65 NC_001798.1 + 121455 0.68 0.359906
Target:  5'- cUGCCGcGcGUCCCCagcgcgggcgggcuGUUcgucucCCUGCCGGUCg -3'
miRNA:   3'- aACGGC-C-CGGGGG--------------CAA------GGACGGCCAG- -5'
5194 3' -65 NC_001798.1 + 122123 0.67 0.409778
Target:  5'- uUUGCCagccggggGGGCCCCCGggCC-GCgGG-Cg -3'
miRNA:   3'- -AACGG--------CCCGGGGGCaaGGaCGgCCaG- -5'
5194 3' -65 NC_001798.1 + 126407 0.66 0.48797
Target:  5'- -cGCCGcucgucccccgaGGCCCCCGgcCCUG-CGGcCa -3'
miRNA:   3'- aaCGGC------------CCGGGGGCaaGGACgGCCaG- -5'
5194 3' -65 NC_001798.1 + 129366 0.68 0.377615
Target:  5'- -gGCgGGGCCCCCGgaCCcGCCa--- -3'
miRNA:   3'- aaCGgCCCGGGGGCaaGGaCGGccag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.