miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 3' -65 NC_001798.1 + 2470 0.67 0.401578
Target:  5'- -gGUCgGGGCCCUCGgcgggCCgGCgGGUCa -3'
miRNA:   3'- aaCGG-CCCGGGGGCaa---GGaCGgCCAG- -5'
5194 3' -65 NC_001798.1 + 3026 0.67 0.426487
Target:  5'- -gGCCGGGCuccggccagCCCCGgcacggCC-GCCaGGUCg -3'
miRNA:   3'- aaCGGCCCG---------GGGGCaa----GGaCGG-CCAG- -5'
5194 3' -65 NC_001798.1 + 5547 0.66 0.469957
Target:  5'- aUGCCGGccccgcGCUCCCGUUggccCCcGCCGGcCc -3'
miRNA:   3'- aACGGCC------CGGGGGCAA----GGaCGGCCaG- -5'
5194 3' -65 NC_001798.1 + 20017 0.66 0.48797
Target:  5'- -gGCCggggaGGGCCCCCccUCCgUGUCGGa- -3'
miRNA:   3'- aaCGG-----CCCGGGGGcaAGG-ACGGCCag -5'
5194 3' -65 NC_001798.1 + 23664 0.66 0.45229
Target:  5'- -cGCCGGGCCCgCGcggCggugGCCGGcCg -3'
miRNA:   3'- aaCGGCCCGGGgGCaagGa---CGGCCaG- -5'
5194 3' -65 NC_001798.1 + 23714 0.68 0.369844
Target:  5'- -gGCCGGGCggCCCCGgcgggUCgaGCUGGa- -3'
miRNA:   3'- aaCGGCCCG--GGGGCa----AGgaCGGCCag -5'
5194 3' -65 NC_001798.1 + 24859 0.68 0.347194
Target:  5'- -cGCCGuGGCCgCCGUgcgcgCCgugaGCCuGGUCg -3'
miRNA:   3'- aaCGGC-CCGGgGGCAa----GGa---CGG-CCAG- -5'
5194 3' -65 NC_001798.1 + 27719 0.67 0.409778
Target:  5'- -gGCgGGaGUCCCCG-UCCUGCCGc-- -3'
miRNA:   3'- aaCGgCC-CGGGGGCaAGGACGGCcag -5'
5194 3' -65 NC_001798.1 + 27919 0.66 0.45229
Target:  5'- -cGCCgGGGUCCCCG--CC-GCCGGg- -3'
miRNA:   3'- aaCGG-CCCGGGGGCaaGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 31667 0.73 0.175099
Target:  5'- -gGCCGGGCCCgCGccgcccgCCgUGCCGGUg -3'
miRNA:   3'- aaCGGCCCGGGgGCaa-----GG-ACGGCCAg -5'
5194 3' -65 NC_001798.1 + 32071 0.68 0.359906
Target:  5'- -cGCCGcGCCCCCGUcggcgucuccgucgUCCcagGCCgcGGUCg -3'
miRNA:   3'- aaCGGCcCGGGGGCA--------------AGGa--CGG--CCAG- -5'
5194 3' -65 NC_001798.1 + 33200 0.66 0.478922
Target:  5'- -aGCCGcccccaCCCCCGaggCCUGuuGGUCu -3'
miRNA:   3'- aaCGGCcc----GGGGGCaa-GGACggCCAG- -5'
5194 3' -65 NC_001798.1 + 34811 0.71 0.249127
Target:  5'- -gGCCccgGGGCCCCCGcgcUCC-GCCGGg- -3'
miRNA:   3'- aaCGG---CCCGGGGGCa--AGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 34881 0.66 0.478922
Target:  5'- -cGCCGGGCggcuaCCCGggacccCCgGCCGGg- -3'
miRNA:   3'- aaCGGCCCGg----GGGCaa----GGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 34986 0.67 0.443593
Target:  5'- gUGCgGGGgCCCC--UCCgGCCGGg- -3'
miRNA:   3'- aACGgCCCgGGGGcaAGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 36231 0.68 0.377615
Target:  5'- -cGCCGcGCCCgCGUUUCUGCCGc-- -3'
miRNA:   3'- aaCGGCcCGGGgGCAAGGACGGCcag -5'
5194 3' -65 NC_001798.1 + 36402 0.73 0.175099
Target:  5'- -cGCCGGGgCCCC---CCUGCCGGg- -3'
miRNA:   3'- aaCGGCCCgGGGGcaaGGACGGCCag -5'
5194 3' -65 NC_001798.1 + 38435 0.66 0.469957
Target:  5'- -gGCCGGGgCCCCacauuuaUCCgGUgGGUCa -3'
miRNA:   3'- aaCGGCCCgGGGGca-----AGGaCGgCCAG- -5'
5194 3' -65 NC_001798.1 + 51203 0.66 0.497097
Target:  5'- -cGCCGGGCgUCCuUUCCgcGCCccaGGUCc -3'
miRNA:   3'- aaCGGCCCGgGGGcAAGGa-CGG---CCAG- -5'
5194 3' -65 NC_001798.1 + 53067 0.69 0.339868
Target:  5'- -gGCgGGGCCCCCGa-CCgaaCGGUCu -3'
miRNA:   3'- aaCGgCCCGGGGGCaaGGacgGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.