miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 3' -65 NC_001798.1 + 92163 1.06 0.00061
Target:  5'- cUUGCCGGGCCCCCGUUCCUGCCGGUCg -3'
miRNA:   3'- -AACGGCCCGGGGGCAAGGACGGCCAG- -5'
5194 3' -65 NC_001798.1 + 86916 0.76 0.112576
Target:  5'- -cGCCGGGCCuCCCGcaagagCCUGCCG-UCg -3'
miRNA:   3'- aaCGGCCCGG-GGGCaa----GGACGGCcAG- -5'
5194 3' -65 NC_001798.1 + 91365 0.74 0.150305
Target:  5'- -aGCCGGGCCgCCCGcggcacaaaacaucgCC-GCCGGUCg -3'
miRNA:   3'- aaCGGCCCGG-GGGCaa-------------GGaCGGCCAG- -5'
5194 3' -65 NC_001798.1 + 79986 0.74 0.155145
Target:  5'- -cGCCGGGCCCCCGggggUCCcagcGCCacugcGUCg -3'
miRNA:   3'- aaCGGCCCGGGGGCa---AGGa---CGGc----CAG- -5'
5194 3' -65 NC_001798.1 + 31667 0.73 0.175099
Target:  5'- -gGCCGGGCCCgCGccgcccgCCgUGCCGGUg -3'
miRNA:   3'- aaCGGCCCGGGgGCaa-----GG-ACGGCCAg -5'
5194 3' -65 NC_001798.1 + 36402 0.73 0.175099
Target:  5'- -cGCCGGGgCCCC---CCUGCCGGg- -3'
miRNA:   3'- aaCGGCCCgGGGGcaaGGACGGCCag -5'
5194 3' -65 NC_001798.1 + 152380 0.72 0.192676
Target:  5'- -cGCCGGGCCgCCGcUCCgucgcucgcagUGCCGGg- -3'
miRNA:   3'- aaCGGCCCGGgGGCaAGG-----------ACGGCCag -5'
5194 3' -65 NC_001798.1 + 34811 0.71 0.249127
Target:  5'- -gGCCccgGGGCCCCCGcgcUCC-GCCGGg- -3'
miRNA:   3'- aaCGG---CCCGGGGGCa--AGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 111781 0.71 0.254886
Target:  5'- -gGCgCGGGUgCCCGUgaucacgacaUCCgugcGCCGGUCg -3'
miRNA:   3'- aaCG-GCCCGgGGGCA----------AGGa---CGGCCAG- -5'
5194 3' -65 NC_001798.1 + 59881 0.69 0.311011
Target:  5'- -gGUCGGGCCggCCCGagagUCCUGggacgccaagcucCCGGUCg -3'
miRNA:   3'- aaCGGCCCGG--GGGCa---AGGAC-------------GGCCAG- -5'
5194 3' -65 NC_001798.1 + 53067 0.69 0.339868
Target:  5'- -gGCgGGGCCCCCGa-CCgaaCGGUCu -3'
miRNA:   3'- aaCGgCCCGGGGGCaaGGacgGCCAG- -5'
5194 3' -65 NC_001798.1 + 24859 0.68 0.347194
Target:  5'- -cGCCGuGGCCgCCGUgcgcgCCgugaGCCuGGUCg -3'
miRNA:   3'- aaCGGC-CCGGgGGCAa----GGa---CGG-CCAG- -5'
5194 3' -65 NC_001798.1 + 121455 0.68 0.359906
Target:  5'- cUGCCGcGcGUCCCCagcgcgggcgggcuGUUcgucucCCUGCCGGUCg -3'
miRNA:   3'- aACGGC-C-CGGGGG--------------CAA------GGACGGCCAG- -5'
5194 3' -65 NC_001798.1 + 32071 0.68 0.359906
Target:  5'- -cGCCGcGCCCCCGUcggcgucuccgucgUCCcagGCCgcGGUCg -3'
miRNA:   3'- aaCGGCcCGGGGGCA--------------AGGa--CGG--CCAG- -5'
5194 3' -65 NC_001798.1 + 102369 0.68 0.362183
Target:  5'- -cGCCGGaaGCCCaCCcg-CCUGgCGGUCg -3'
miRNA:   3'- aaCGGCC--CGGG-GGcaaGGACgGCCAG- -5'
5194 3' -65 NC_001798.1 + 69331 0.68 0.362183
Target:  5'- -cGCCGGGCUCCCcugaggaucuuGUccacggCCUGCuCGGUa -3'
miRNA:   3'- aaCGGCCCGGGGG-----------CAa-----GGACG-GCCAg -5'
5194 3' -65 NC_001798.1 + 77435 0.68 0.369844
Target:  5'- -cGCCGGGCCUgCGc-CCaGCCGGa- -3'
miRNA:   3'- aaCGGCCCGGGgGCaaGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 23714 0.68 0.369844
Target:  5'- -gGCCGGGCggCCCCGgcgggUCgaGCUGGa- -3'
miRNA:   3'- aaCGGCCCG--GGGGCa----AGgaCGGCCag -5'
5194 3' -65 NC_001798.1 + 36231 0.68 0.377615
Target:  5'- -cGCCGcGCCCgCGUUUCUGCCGc-- -3'
miRNA:   3'- aaCGGCcCGGGgGCAAGGACGGCcag -5'
5194 3' -65 NC_001798.1 + 129366 0.68 0.377615
Target:  5'- -gGCgGGGCCCCCGgaCCcGCCa--- -3'
miRNA:   3'- aaCGgCCCGGGGGCaaGGaCGGccag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.