Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5194 | 3' | -65 | NC_001798.1 | + | 147004 | 0.68 | 0.393484 |
Target: 5'- cUUGCCucgGGGaCCCCCGggCggGCCGGg- -3' miRNA: 3'- -AACGG---CCC-GGGGGCaaGgaCGGCCag -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 2470 | 0.67 | 0.401578 |
Target: 5'- -gGUCgGGGCCCUCGgcgggCCgGCgGGUCa -3' miRNA: 3'- aaCGG-CCCGGGGGCaa---GGaCGgCCAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 67579 | 0.67 | 0.401578 |
Target: 5'- --cUCGGGCUCCCGggguUCCUGUCGuUCg -3' miRNA: 3'- aacGGCCCGGGGGCa---AGGACGGCcAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 147244 | 0.67 | 0.409778 |
Target: 5'- --cCCGGGgCCCCGggCCgcGCCGG-Cg -3' miRNA: 3'- aacGGCCCgGGGGCaaGGa-CGGCCaG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 135534 | 0.67 | 0.409778 |
Target: 5'- -cGCCGGGCCCUCGaggcgUCCgugcgcGCCGu-- -3' miRNA: 3'- aaCGGCCCGGGGGCa----AGGa-----CGGCcag -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 27719 | 0.67 | 0.409778 |
Target: 5'- -gGCgGGaGUCCCCG-UCCUGCCGc-- -3' miRNA: 3'- aaCGgCC-CGGGGGCaAGGACGGCcag -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 122123 | 0.67 | 0.409778 |
Target: 5'- uUUGCCagccggggGGGCCCCCGggCC-GCgGG-Cg -3' miRNA: 3'- -AACGG--------CCCGGGGGCaaGGaCGgCCaG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 80946 | 0.67 | 0.413087 |
Target: 5'- -cGCCgacGGGCCCCCGUgccugguccUCgUGgacaucuccaugaccCCGGUCg -3' miRNA: 3'- aaCGG---CCCGGGGGCA---------AGgAC---------------GGCCAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 152273 | 0.67 | 0.426487 |
Target: 5'- gUGCCGGGCCgggGUUCCaugaGCCGGg- -3' miRNA: 3'- aACGGCCCGGgggCAAGGa---CGGCCag -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 3026 | 0.67 | 0.426487 |
Target: 5'- -gGCCGGGCuccggccagCCCCGgcacggCC-GCCaGGUCg -3' miRNA: 3'- aaCGGCCCG---------GGGGCaa----GGaCGG-CCAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 146625 | 0.67 | 0.426487 |
Target: 5'- -cGCCGcauuaGGCCCCCGcgggcaUCCggcgGCCGGcCc -3' miRNA: 3'- aaCGGC-----CCGGGGGCa-----AGGa---CGGCCaG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 130162 | 0.67 | 0.434991 |
Target: 5'- --aUCGGGUCCCCGUcggaaUCCccauaCCGGUCg -3' miRNA: 3'- aacGGCCCGGGGGCA-----AGGac---GGCCAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 111735 | 0.67 | 0.434991 |
Target: 5'- -cGCUuGGCCCCCGcgCCcccgGCCccGGUCc -3' miRNA: 3'- aaCGGcCCGGGGGCaaGGa---CGG--CCAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 130449 | 0.67 | 0.443593 |
Target: 5'- -cGuCUGGGCCCCCGgccaCUGCUGcUCc -3' miRNA: 3'- aaC-GGCCCGGGGGCaag-GACGGCcAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 34986 | 0.67 | 0.443593 |
Target: 5'- gUGCgGGGgCCCC--UCCgGCCGGg- -3' miRNA: 3'- aACGgCCCgGGGGcaAGGaCGGCCag -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 23664 | 0.66 | 0.45229 |
Target: 5'- -cGCCGGGCCCgCGcggCggugGCCGGcCg -3' miRNA: 3'- aaCGGCCCGGGgGCaagGa---CGGCCaG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 27919 | 0.66 | 0.45229 |
Target: 5'- -cGCCgGGGUCCCCG--CC-GCCGGg- -3' miRNA: 3'- aaCGG-CCCGGGGGCaaGGaCGGCCag -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 77086 | 0.66 | 0.461079 |
Target: 5'- -cGCCGacGCCCCCGagaC-GCCGGUCc -3' miRNA: 3'- aaCGGCc-CGGGGGCaagGaCGGCCAG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 5547 | 0.66 | 0.469957 |
Target: 5'- aUGCCGGccccgcGCUCCCGUUggccCCcGCCGGcCc -3' miRNA: 3'- aACGGCC------CGGGGGCAA----GGaCGGCCaG- -5' |
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5194 | 3' | -65 | NC_001798.1 | + | 38435 | 0.66 | 0.469957 |
Target: 5'- -gGCCGGGgCCCCacauuuaUCCgGUgGGUCa -3' miRNA: 3'- aaCGGCCCgGGGGca-----AGGaCGgCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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