miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 3' -65 NC_001798.1 + 152380 0.72 0.192676
Target:  5'- -cGCCGGGCCgCCGcUCCgucgcucgcagUGCCGGg- -3'
miRNA:   3'- aaCGGCCCGGgGGCaAGG-----------ACGGCCag -5'
5194 3' -65 NC_001798.1 + 152273 0.67 0.426487
Target:  5'- gUGCCGGGCCgggGUUCCaugaGCCGGg- -3'
miRNA:   3'- aACGGCCCGGgggCAAGGa---CGGCCag -5'
5194 3' -65 NC_001798.1 + 147244 0.67 0.409778
Target:  5'- --cCCGGGgCCCCGggCCgcGCCGG-Cg -3'
miRNA:   3'- aacGGCCCgGGGGCaaGGa-CGGCCaG- -5'
5194 3' -65 NC_001798.1 + 147004 0.68 0.393484
Target:  5'- cUUGCCucgGGGaCCCCCGggCggGCCGGg- -3'
miRNA:   3'- -AACGG---CCC-GGGGGCaaGgaCGGCCag -5'
5194 3' -65 NC_001798.1 + 146625 0.67 0.426487
Target:  5'- -cGCCGcauuaGGCCCCCGcgggcaUCCggcgGCCGGcCc -3'
miRNA:   3'- aaCGGC-----CCGGGGGCa-----AGGa---CGGCCaG- -5'
5194 3' -65 NC_001798.1 + 146476 0.66 0.478922
Target:  5'- -cGCCgcGGGCUCCgGggCCggGCCGGg- -3'
miRNA:   3'- aaCGG--CCCGGGGgCaaGGa-CGGCCag -5'
5194 3' -65 NC_001798.1 + 137919 0.66 0.478922
Target:  5'- -cGCCGGGCggCCCGcgCCUcccccggccGCCcGGUCc -3'
miRNA:   3'- aaCGGCCCGg-GGGCaaGGA---------CGG-CCAG- -5'
5194 3' -65 NC_001798.1 + 135534 0.67 0.409778
Target:  5'- -cGCCGGGCCCUCGaggcgUCCgugcgcGCCGu-- -3'
miRNA:   3'- aaCGGCCCGGGGGCa----AGGa-----CGGCcag -5'
5194 3' -65 NC_001798.1 + 130449 0.67 0.443593
Target:  5'- -cGuCUGGGCCCCCGgccaCUGCUGcUCc -3'
miRNA:   3'- aaC-GGCCCGGGGGCaag-GACGGCcAG- -5'
5194 3' -65 NC_001798.1 + 130162 0.67 0.434991
Target:  5'- --aUCGGGUCCCCGUcggaaUCCccauaCCGGUCg -3'
miRNA:   3'- aacGGCCCGGGGGCA-----AGGac---GGCCAG- -5'
5194 3' -65 NC_001798.1 + 129366 0.68 0.377615
Target:  5'- -gGCgGGGCCCCCGgaCCcGCCa--- -3'
miRNA:   3'- aaCGgCCCGGGGGCaaGGaCGGccag -5'
5194 3' -65 NC_001798.1 + 126407 0.66 0.48797
Target:  5'- -cGCCGcucgucccccgaGGCCCCCGgcCCUG-CGGcCa -3'
miRNA:   3'- aaCGGC------------CCGGGGGCaaGGACgGCCaG- -5'
5194 3' -65 NC_001798.1 + 122123 0.67 0.409778
Target:  5'- uUUGCCagccggggGGGCCCCCGggCC-GCgGG-Cg -3'
miRNA:   3'- -AACGG--------CCCGGGGGCaaGGaCGgCCaG- -5'
5194 3' -65 NC_001798.1 + 121455 0.68 0.359906
Target:  5'- cUGCCGcGcGUCCCCagcgcgggcgggcuGUUcgucucCCUGCCGGUCg -3'
miRNA:   3'- aACGGC-C-CGGGGG--------------CAA------GGACGGCCAG- -5'
5194 3' -65 NC_001798.1 + 111781 0.71 0.254886
Target:  5'- -gGCgCGGGUgCCCGUgaucacgacaUCCgugcGCCGGUCg -3'
miRNA:   3'- aaCG-GCCCGgGGGCA----------AGGa---CGGCCAG- -5'
5194 3' -65 NC_001798.1 + 111735 0.67 0.434991
Target:  5'- -cGCUuGGCCCCCGcgCCcccgGCCccGGUCc -3'
miRNA:   3'- aaCGGcCCGGGGGCaaGGa---CGG--CCAG- -5'
5194 3' -65 NC_001798.1 + 102369 0.68 0.362183
Target:  5'- -cGCCGGaaGCCCaCCcg-CCUGgCGGUCg -3'
miRNA:   3'- aaCGGCC--CGGG-GGcaaGGACgGCCAG- -5'
5194 3' -65 NC_001798.1 + 92163 1.06 0.00061
Target:  5'- cUUGCCGGGCCCCCGUUCCUGCCGGUCg -3'
miRNA:   3'- -AACGGCCCGGGGGCAAGGACGGCCAG- -5'
5194 3' -65 NC_001798.1 + 91365 0.74 0.150305
Target:  5'- -aGCCGGGCCgCCCGcggcacaaaacaucgCC-GCCGGUCg -3'
miRNA:   3'- aaCGGCCCGG-GGGCaa-------------GGaCGGCCAG- -5'
5194 3' -65 NC_001798.1 + 86916 0.76 0.112576
Target:  5'- -cGCCGGGCCuCCCGcaagagCCUGCCG-UCg -3'
miRNA:   3'- aaCGGCCCGG-GGGCaa----GGACGGCcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.