miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 5' -53.9 NC_001798.1 + 28626 0.67 0.907861
Target:  5'- aCGggGGUCcUGGGCGCgCGAGCgggCCGAc -3'
miRNA:   3'- gGCuuUCGGuACCUGUG-GUUCG---GGUU- -5'
5194 5' -53.9 NC_001798.1 + 122183 0.67 0.907861
Target:  5'- cUCGu--GCCggGGAcCGCCAAGCCgCGAu -3'
miRNA:   3'- -GGCuuuCGGuaCCU-GUGGUUCGG-GUU- -5'
5194 5' -53.9 NC_001798.1 + 50996 0.67 0.907861
Target:  5'- gCCGAcucGcCCGUGGAgGaCGAGCCCGAg -3'
miRNA:   3'- -GGCUuu-C-GGUACCUgUgGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 3512 0.68 0.901476
Target:  5'- gCGGccGCCAcGuGCGCCAGGCCCc- -3'
miRNA:   3'- gGCUuuCGGUaCcUGUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 2406 0.68 0.901476
Target:  5'- gCGgcGGCCGaGGGCGCCGgcguguggcugGGCCCc- -3'
miRNA:   3'- gGCuuUCGGUaCCUGUGGU-----------UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 89258 0.68 0.901476
Target:  5'- cCCGGAgguggGGUCGaGGAC-CCGGGCCCc- -3'
miRNA:   3'- -GGCUU-----UCGGUaCCUGuGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 99932 0.68 0.901476
Target:  5'- aCCGcAAGCCccGGaAUGCCAcGCCCGc -3'
miRNA:   3'- -GGCuUUCGGuaCC-UGUGGUuCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 76041 0.68 0.896861
Target:  5'- cCCG-AGGCCAUccaggcgcggcuggaGGACGugcggauCCAGGCCCGc -3'
miRNA:   3'- -GGCuUUCGGUA---------------CCUGU-------GGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 95017 0.68 0.894846
Target:  5'- gCGcgGGCC-UGGAgGCCGGGgCCCGc -3'
miRNA:   3'- gGCuuUCGGuACCUgUGGUUC-GGGUu -5'
5194 5' -53.9 NC_001798.1 + 103605 0.68 0.894846
Target:  5'- gCCGAc-GCCAUGGGCACCc-GCaCAAa -3'
miRNA:   3'- -GGCUuuCGGUACCUGUGGuuCGgGUU- -5'
5194 5' -53.9 NC_001798.1 + 35436 0.68 0.89417
Target:  5'- gCGGGAGgCGUGGGCcgcuggcGCCGcGGCCCGu -3'
miRNA:   3'- gGCUUUCgGUACCUG-------UGGU-UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 146579 0.68 0.887976
Target:  5'- gCCGcgGGCCAgcagacgGGccgcgGCGCCAgcGGCCCAc -3'
miRNA:   3'- -GGCuuUCGGUa------CC-----UGUGGU--UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 136508 0.68 0.880868
Target:  5'- cCCGAAAGCCAccaauACACCAgAGCCgAAc -3'
miRNA:   3'- -GGCUUUCGGUacc--UGUGGU-UCGGgUU- -5'
5194 5' -53.9 NC_001798.1 + 117628 0.68 0.880868
Target:  5'- cCCGu-GGCCAcGGACAUCAacuacuuucgccGGCCCu- -3'
miRNA:   3'- -GGCuuUCGGUaCCUGUGGU------------UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 102226 0.68 0.880868
Target:  5'- aCCGGGcgcGGCUcgGGGCggGCCucGCCCGGg -3'
miRNA:   3'- -GGCUU---UCGGuaCCUG--UGGuuCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 70551 0.68 0.880868
Target:  5'- gCUGGAGGCCGccgGGcugcGCACCAcggcGGCCCu- -3'
miRNA:   3'- -GGCUUUCGGUa--CC----UGUGGU----UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 126956 0.68 0.880868
Target:  5'- gCGGGaucAGCCAccUGGACAUCAAGUgcgCCAAc -3'
miRNA:   3'- gGCUU---UCGGU--ACCUGUGGUUCG---GGUU- -5'
5194 5' -53.9 NC_001798.1 + 153011 0.68 0.873529
Target:  5'- gCGGucGCCGgggcGGAguCCGGGCCCGc -3'
miRNA:   3'- gGCUuuCGGUa---CCUguGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 135239 0.68 0.873529
Target:  5'- gCCGGAAGCCcggGGGCgGgCGGGCCUGGa -3'
miRNA:   3'- -GGCUUUCGGua-CCUG-UgGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 79374 0.69 0.865962
Target:  5'- gCCGgcGGCCAgacgggcgcGGGCGCgGAGUCCGc -3'
miRNA:   3'- -GGCuuUCGGUa--------CCUGUGgUUCGGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.