miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 5' -53.9 NC_001798.1 + 86895 0.67 0.930915
Target:  5'- gCCGGGAaccccGgCGUGGAgCGCCGGGCCUc- -3'
miRNA:   3'- -GGCUUU-----CgGUACCU-GUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 116310 0.67 0.92879
Target:  5'- aCCGAGAcuGCCGgauugacgcggggGGGCA-CGAGCCCGu -3'
miRNA:   3'- -GGCUUU--CGGUa------------CCUGUgGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 2797 0.67 0.925527
Target:  5'- gCGGGcuCCGcGGcaGCGCCGGGCCCAGg -3'
miRNA:   3'- gGCUUucGGUaCC--UGUGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 25513 0.67 0.925527
Target:  5'- gCGgcGGCC-UGGauGCGCCAGguGCCCGAc -3'
miRNA:   3'- gGCuuUCGGuACC--UGUGGUU--CGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 37482 0.67 0.925527
Target:  5'- gCGAGAGCUGU----ACCGGGCCCAAc -3'
miRNA:   3'- gGCUUUCGGUAccugUGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 12291 0.67 0.925527
Target:  5'- cCCacAGGCCcaGGAuCGCCAGGCCCu- -3'
miRNA:   3'- -GGcuUUCGGuaCCU-GUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 123407 0.67 0.925527
Target:  5'- cCCGGGAGCCGcGGcccCGCCGGGUcaCCGGg -3'
miRNA:   3'- -GGCUUUCGGUaCCu--GUGGUUCG--GGUU- -5'
5194 5' -53.9 NC_001798.1 + 91553 0.67 0.92442
Target:  5'- uUCGAGAGCCAgUgugugguguccgcggGGGCGCCGcgguuucuuuuuaucGGCCCGg -3'
miRNA:   3'- -GGCUUUCGGU-A---------------CCUGUGGU---------------UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 116147 0.67 0.919888
Target:  5'- gUCGAGgcccuGGCCcagcugGUGGACgacuuuacccuGCCGGGCCCGGa -3'
miRNA:   3'- -GGCUU-----UCGG------UACCUG-----------UGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 93249 0.67 0.919888
Target:  5'- uUGAGGGCCA-GGAaaCGCCcgcGGCCCGc -3'
miRNA:   3'- gGCUUUCGGUaCCU--GUGGu--UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 61842 0.67 0.919888
Target:  5'- cCCGggGGaCCggGGAacgcggGCCGccGGCCCAGc -3'
miRNA:   3'- -GGCuuUC-GGuaCCUg-----UGGU--UCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 28211 0.67 0.919888
Target:  5'- gCCGGAGGCCccGcACGCCGcGCCUg- -3'
miRNA:   3'- -GGCUUUCGGuaCcUGUGGUuCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 70089 0.67 0.919311
Target:  5'- gCCGGucGCCAUgucGGACAgcgcgcuCCAGGuCCCGg -3'
miRNA:   3'- -GGCUuuCGGUA---CCUGU-------GGUUC-GGGUu -5'
5194 5' -53.9 NC_001798.1 + 110039 0.67 0.919311
Target:  5'- cCCGGAGGCCAcc--CACCAguguagcGGCCCGu -3'
miRNA:   3'- -GGCUUUCGGUaccuGUGGU-------UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 89416 0.67 0.913999
Target:  5'- cCCGAGgcacGGCCGggcgcuUGGGCGCCuccuugucgAGGCCCc- -3'
miRNA:   3'- -GGCUU----UCGGU------ACCUGUGG---------UUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 135790 0.67 0.913999
Target:  5'- gCCGGAggaGGCCGUGuGCGC--GGCCCGGg -3'
miRNA:   3'- -GGCUU---UCGGUACcUGUGguUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 123943 0.67 0.913999
Target:  5'- uCCGggGGCCugGUGG-CACCuc-CCCGg -3'
miRNA:   3'- -GGCuuUCGG--UACCuGUGGuucGGGUu -5'
5194 5' -53.9 NC_001798.1 + 60948 0.67 0.913999
Target:  5'- aCGAGGcgcGUCGUGu-CACCGGGCCCGGa -3'
miRNA:   3'- gGCUUU---CGGUACcuGUGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 122183 0.67 0.907861
Target:  5'- cUCGu--GCCggGGAcCGCCAAGCCgCGAu -3'
miRNA:   3'- -GGCuuuCGGuaCCU-GUGGUUCGG-GUU- -5'
5194 5' -53.9 NC_001798.1 + 28626 0.67 0.907861
Target:  5'- aCGggGGUCcUGGGCGCgCGAGCgggCCGAc -3'
miRNA:   3'- gGCuuUCGGuACCUGUG-GUUCG---GGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.