miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 5' -53.9 NC_001798.1 + 16141 0.66 0.949971
Target:  5'- gCGGAAuaCCAUaccggGGGCACCGAGCgCCAc -3'
miRNA:   3'- gGCUUUc-GGUA-----CCUGUGGUUCG-GGUu -5'
5194 5' -53.9 NC_001798.1 + 34988 0.66 0.949971
Target:  5'- gCGggGGCCccuccggccgGGGCgcaccucggcgGCCAAGCCCc- -3'
miRNA:   3'- gGCuuUCGGua--------CCUG-----------UGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 50714 0.66 0.949971
Target:  5'- cCCGcgGGUCugcGUGGGgACgAGGCCCAc -3'
miRNA:   3'- -GGCuuUCGG---UACCUgUGgUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 4121 0.66 0.949543
Target:  5'- gCGGGcucGGCCG-GGGCGCCGcccccggGGCCCu- -3'
miRNA:   3'- gGCUU---UCGGUaCCUGUGGU-------UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 141720 0.66 0.945578
Target:  5'- aCGGAgcuGGCCAUGGcCAUCAAcGCCg-- -3'
miRNA:   3'- gGCUU---UCGGUACCuGUGGUU-CGGguu -5'
5194 5' -53.9 NC_001798.1 + 103001 0.66 0.945578
Target:  5'- gCCGggGGCCcaGGuGCGCCcGGCCa-- -3'
miRNA:   3'- -GGCuuUCGGuaCC-UGUGGuUCGGguu -5'
5194 5' -53.9 NC_001798.1 + 6676 0.66 0.944213
Target:  5'- gCCGGgcGCCGccuucguggacgGGACACCAugucuugGGCCCu- -3'
miRNA:   3'- -GGCUuuCGGUa-----------CCUGUGGU-------UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 22148 0.66 0.940939
Target:  5'- gCGggGGCCAacgGGAgCGCgGGGCCg-- -3'
miRNA:   3'- gGCuuUCGGUa--CCU-GUGgUUCGGguu -5'
5194 5' -53.9 NC_001798.1 + 23797 0.66 0.940939
Target:  5'- gCgGGGAGCCGUGG-C-CCGGGgCCGg -3'
miRNA:   3'- -GgCUUUCGGUACCuGuGGUUCgGGUu -5'
5194 5' -53.9 NC_001798.1 + 40990 0.66 0.940939
Target:  5'- aCCGAGGGCCAcgaagcGGAgCAgCAgcucgcAGCCCAc -3'
miRNA:   3'- -GGCUUUCGGUa-----CCU-GUgGU------UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 48095 0.66 0.940939
Target:  5'- aCCGAGccccacggcGCCGUGGACcccccgggugGCCGGGUUCAAc -3'
miRNA:   3'- -GGCUUu--------CGGUACCUG----------UGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 74756 0.66 0.940939
Target:  5'- gCGAAgcccucGGCCccGGACGCCGcGGCCUc- -3'
miRNA:   3'- gGCUU------UCGGuaCCUGUGGU-UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 149474 0.66 0.940939
Target:  5'- gCGggGGCCGcGGcccGCAgCAGGUCCGc -3'
miRNA:   3'- gGCuuUCGGUaCC---UGUgGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 15370 0.66 0.936052
Target:  5'- -gGAAucGGCCGUGGGCGCgGcggaggcGCCCAc -3'
miRNA:   3'- ggCUU--UCGGUACCUGUGgUu------CGGGUu -5'
5194 5' -53.9 NC_001798.1 + 17972 0.66 0.936052
Target:  5'- uCCGGAcGUCGggggGGGCugCGcGGCCCGGa -3'
miRNA:   3'- -GGCUUuCGGUa---CCUGugGU-UCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 108688 0.66 0.936052
Target:  5'- cCCGggGccGCCcgcggGGACACCGAGgcaUCCGAc -3'
miRNA:   3'- -GGCuuU--CGGua---CCUGUGGUUC---GGGUU- -5'
5194 5' -53.9 NC_001798.1 + 79050 0.66 0.936052
Target:  5'- aCGGu-GUCG-GGGCugCGGGCCCAGc -3'
miRNA:   3'- gGCUuuCGGUaCCUGugGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 139385 0.66 0.936052
Target:  5'- gCGGGAcGUCc-GGGCACCAGGUCCGc -3'
miRNA:   3'- gGCUUU-CGGuaCCUGUGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 127933 0.67 0.930915
Target:  5'- cCCGAcggcgGGGCCccGGGCGaaaAGGCCCGg -3'
miRNA:   3'- -GGCU-----UUCGGuaCCUGUgg-UUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 86895 0.67 0.930915
Target:  5'- gCCGGGAaccccGgCGUGGAgCGCCGGGCCUc- -3'
miRNA:   3'- -GGCUUU-----CgGUACCU-GUGGUUCGGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.