miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 5' -53.9 NC_001798.1 + 23933 0.69 0.824953
Target:  5'- cCCGGc-GCCcguGUGGGCGCCGAGCUgGg -3'
miRNA:   3'- -GGCUuuCGG---UACCUGUGGUUCGGgUu -5'
5194 5' -53.9 NC_001798.1 + 24591 0.66 0.954122
Target:  5'- gCCGcguGGCCGUGGAgUGCCuGGCCg-- -3'
miRNA:   3'- -GGCuu-UCGGUACCU-GUGGuUCGGguu -5'
5194 5' -53.9 NC_001798.1 + 24878 0.69 0.841964
Target:  5'- gCCGuGAGCC-UGGuCGCCGgGGCCCu- -3'
miRNA:   3'- -GGCuUUCGGuACCuGUGGU-UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 25116 0.67 0.907861
Target:  5'- cCCGAagaaGAGCCGcgcGGACGCCccccGCCCc- -3'
miRNA:   3'- -GGCU----UUCGGUa--CCUGUGGuu--CGGGuu -5'
5194 5' -53.9 NC_001798.1 + 25240 0.66 0.95166
Target:  5'- gCCGAGGGCCccGacccgcagggcggcuGGCGCCGccagccgccggGGCCCAGc -3'
miRNA:   3'- -GGCUUUCGGuaC---------------CUGUGGU-----------UCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 25338 0.69 0.865962
Target:  5'- cCCGcgGGCCGUGG---CCGAGCUCAc -3'
miRNA:   3'- -GGCuuUCGGUACCuguGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 25378 0.69 0.833555
Target:  5'- cCCGc--GCCGUGG-CGCCcGGCCCu- -3'
miRNA:   3'- -GGCuuuCGGUACCuGUGGuUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 25513 0.67 0.925527
Target:  5'- gCGgcGGCC-UGGauGCGCCAGguGCCCGAc -3'
miRNA:   3'- gGCuuUCGGuACC--UGUGGUU--CGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 26576 0.69 0.865194
Target:  5'- gCCGAggcgcGAGCCcguggacAUGGACGCgGAGCUgGAg -3'
miRNA:   3'- -GGCU-----UUCGG-------UACCUGUGgUUCGGgUU- -5'
5194 5' -53.9 NC_001798.1 + 27100 0.72 0.699736
Target:  5'- aCGAAGGUCA-GGugGCCcGAGCCCc- -3'
miRNA:   3'- gGCUUUCGGUaCCugUGG-UUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 27873 0.69 0.824953
Target:  5'- uCCGGcuccGGGCCu---ACGCCGAGCCCAGc -3'
miRNA:   3'- -GGCU----UUCGGuaccUGUGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 28211 0.67 0.919888
Target:  5'- gCCGGAGGCCccGcACGCCGcGCCUg- -3'
miRNA:   3'- -GGCUUUCGGuaCcUGUGGUuCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 28626 0.67 0.907861
Target:  5'- aCGggGGUCcUGGGCGCgCGAGCgggCCGAc -3'
miRNA:   3'- gGCuuUCGGuACCUGUG-GUUCG---GGUU- -5'
5194 5' -53.9 NC_001798.1 + 28717 0.71 0.720197
Target:  5'- cCCGAggcccGAGCUcgGG-C-CCGAGCCCGAg -3'
miRNA:   3'- -GGCU-----UUCGGuaCCuGuGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 30402 0.66 0.957652
Target:  5'- uUCGAGgcgGGCCugAUGGACgcgGCCAcgcccccGGCCCGg -3'
miRNA:   3'- -GGCUU---UCGG--UACCUG---UGGU-------UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 30450 0.69 0.841964
Target:  5'- gCCGAgcGCCA-GGGCAgccCCAcGCCCGc -3'
miRNA:   3'- -GGCUuuCGGUaCCUGU---GGUuCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 31982 0.69 0.857385
Target:  5'- gUGggGGCCAagagGGcggcgccGCGCCGGGCCCc- -3'
miRNA:   3'- gGCuuUCGGUa---CC-------UGUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 34108 0.72 0.699736
Target:  5'- gUGggGGCgGUGGGCguaCGGGCCCGAc -3'
miRNA:   3'- gGCuuUCGgUACCUGug-GUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 34796 0.66 0.958033
Target:  5'- gCCGGcgcGGCCcgGGGCcCCgGGGCCCc- -3'
miRNA:   3'- -GGCUu--UCGGuaCCUGuGG-UUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 34846 0.69 0.865962
Target:  5'- gCCGGAccGCCGggcgggGGACGCCuuccGCCCGg -3'
miRNA:   3'- -GGCUUu-CGGUa-----CCUGUGGuu--CGGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.