miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 5' -53.9 NC_001798.1 + 1482 0.72 0.679036
Target:  5'- gCCGGgcGCCAUGGcguCGCCcgcGCCCGAg -3'
miRNA:   3'- -GGCUuuCGGUACCu--GUGGuu-CGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 1927 0.69 0.836942
Target:  5'- gCGAAGGCCAggucccgcgUGGACAgCAGcagcacgcccugcgcGCCCAGc -3'
miRNA:   3'- gGCUUUCGGU---------ACCUGUgGUU---------------CGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 2406 0.68 0.901476
Target:  5'- gCGgcGGCCGaGGGCGCCGgcguguggcugGGCCCc- -3'
miRNA:   3'- gGCuuUCGGUaCCUGUGGU-----------UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 2797 0.67 0.925527
Target:  5'- gCGGGcuCCGcGGcaGCGCCGGGCCCAGg -3'
miRNA:   3'- gGCUUucGGUaCC--UGUGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 3512 0.68 0.901476
Target:  5'- gCGGccGCCAcGuGCGCCAGGCCCc- -3'
miRNA:   3'- gGCUuuCGGUaCcUGUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 3782 0.66 0.954122
Target:  5'- aCGGgcGCCG-GGGCGCCcgAGGCCuCGAa -3'
miRNA:   3'- gGCUuuCGGUaCCUGUGG--UUCGG-GUU- -5'
5194 5' -53.9 NC_001798.1 + 4121 0.66 0.949543
Target:  5'- gCGGGcucGGCCG-GGGCGCCGcccccggGGCCCu- -3'
miRNA:   3'- gGCUU---UCGGUaCCUGUGGU-------UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 4731 0.69 0.850174
Target:  5'- gUCGAcGGCCuccccGGACGCCGGGgCCGc -3'
miRNA:   3'- -GGCUuUCGGua---CCUGUGGUUCgGGUu -5'
5194 5' -53.9 NC_001798.1 + 6676 0.66 0.944213
Target:  5'- gCCGGgcGCCGccuucguggacgGGACACCAugucuugGGCCCu- -3'
miRNA:   3'- -GGCUuuCGGUa-----------CCUGUGGU-------UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 12254 0.72 0.699736
Target:  5'- aCCGuGGGGCCGcGGACgACCAGGCCgGu -3'
miRNA:   3'- -GGC-UUUCGGUaCCUG-UGGUUCGGgUu -5'
5194 5' -53.9 NC_001798.1 + 12291 0.67 0.925527
Target:  5'- cCCacAGGCCcaGGAuCGCCAGGCCCu- -3'
miRNA:   3'- -GGcuUUCGGuaCCU-GUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 15370 0.66 0.936052
Target:  5'- -gGAAucGGCCGUGGGCGCgGcggaggcGCCCAc -3'
miRNA:   3'- ggCUU--UCGGUACCUGUGgUu------CGGGUu -5'
5194 5' -53.9 NC_001798.1 + 15811 0.73 0.637226
Target:  5'- cUCGGucaAGGCCAUGaGGCGCCGcccgguucggggGGCCCGAa -3'
miRNA:   3'- -GGCU---UUCGGUAC-CUGUGGU------------UCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 16141 0.66 0.949971
Target:  5'- gCGGAAuaCCAUaccggGGGCACCGAGCgCCAc -3'
miRNA:   3'- gGCUUUc-GGUA-----CCUGUGGUUCG-GGUu -5'
5194 5' -53.9 NC_001798.1 + 17972 0.66 0.936052
Target:  5'- uCCGGAcGUCGggggGGGCugCGcGGCCCGGa -3'
miRNA:   3'- -GGCUUuCGGUa---CCUGugGU-UCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 22148 0.66 0.940939
Target:  5'- gCGggGGCCAacgGGAgCGCgGGGCCg-- -3'
miRNA:   3'- gGCuuUCGGUa--CCU-GUGgUUCGGguu -5'
5194 5' -53.9 NC_001798.1 + 22255 0.66 0.958033
Target:  5'- gCGGAAGCCGcccGCGCCGGGCgCUAAu -3'
miRNA:   3'- gGCUUUCGGUaccUGUGGUUCG-GGUU- -5'
5194 5' -53.9 NC_001798.1 + 23568 0.74 0.60579
Target:  5'- gCGAGGGCCccggGGGCggcgccccgGCCGAGCCCGc -3'
miRNA:   3'- gGCUUUCGGua--CCUG---------UGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 23643 0.75 0.533501
Target:  5'- aCCGcgGGCCGccUGGAgcgcCGCCGGGCCCGc -3'
miRNA:   3'- -GGCuuUCGGU--ACCU----GUGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 23797 0.66 0.940939
Target:  5'- gCgGGGAGCCGUGG-C-CCGGGgCCGg -3'
miRNA:   3'- -GgCUUUCGGUACCuGuGGUUCgGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.