miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 5' -53.9 NC_001798.1 + 92198 1.08 0.004373
Target:  5'- cCCGAAAGCCAUGGACACCAAGCCCAAa -3'
miRNA:   3'- -GGCUUUCGGUACCUGUGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 149304 0.8 0.276928
Target:  5'- aCCGGAGGCCGUGGAaguCCAGcgcGCCCAc -3'
miRNA:   3'- -GGCUUUCGGUACCUgu-GGUU---CGGGUu -5'
5194 5' -53.9 NC_001798.1 + 59892 0.8 0.290552
Target:  5'- cCCGAGAGUCcugGGACGCCAAGCUCc- -3'
miRNA:   3'- -GGCUUUCGGua-CCUGUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 129609 0.76 0.474097
Target:  5'- aCGAAuuugacGUCGUGGACAUCGAGUCCGAa -3'
miRNA:   3'- gGCUUu-----CGGUACCUGUGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 83785 0.75 0.503419
Target:  5'- gCCGggGGgCccGGACGCgGGGCCCGGa -3'
miRNA:   3'- -GGCuuUCgGuaCCUGUGgUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 47860 0.75 0.532487
Target:  5'- cCCGggGGCCccGUGGGCGCCGGcgggcgcucgcacGCCCc- -3'
miRNA:   3'- -GGCuuUCGG--UACCUGUGGUU-------------CGGGuu -5'
5194 5' -53.9 NC_001798.1 + 23643 0.75 0.533501
Target:  5'- aCCGcgGGCCGccUGGAgcgcCGCCGGGCCCGc -3'
miRNA:   3'- -GGCuuUCGGU--ACCU----GUGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 40823 0.75 0.547759
Target:  5'- cCUGggGGCCGcugguuccgcguuuuUGGGgGCCGAGCCCc- -3'
miRNA:   3'- -GGCuuUCGGU---------------ACCUgUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 114935 0.74 0.584923
Target:  5'- cCUGAAGGUgGaGGACACCGAGgCCGAc -3'
miRNA:   3'- -GGCUUUCGgUaCCUGUGGUUCgGGUU- -5'
5194 5' -53.9 NC_001798.1 + 74395 0.74 0.584923
Target:  5'- cCCGggGGCCGUGG-CGCCGgcGGaCCUGAc -3'
miRNA:   3'- -GGCuuUCGGUACCuGUGGU--UC-GGGUU- -5'
5194 5' -53.9 NC_001798.1 + 23568 0.74 0.60579
Target:  5'- gCGAGGGCCccggGGGCggcgccccgGCCGAGCCCGc -3'
miRNA:   3'- gGCUUUCGGua--CCUG---------UGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 73245 0.73 0.616259
Target:  5'- cCCGggGGCCcccGGGgACCuggAGGCCCAAg -3'
miRNA:   3'- -GGCuuUCGGua-CCUgUGG---UUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 120500 0.73 0.62674
Target:  5'- gCCGGAggcgcgcguguuGGCCGUGaACGCCGGGUCCAc -3'
miRNA:   3'- -GGCUU------------UCGGUACcUGUGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 15811 0.73 0.637226
Target:  5'- cUCGGucaAGGCCAUGaGGCGCCGcccgguucggggGGCCCGAa -3'
miRNA:   3'- -GGCU---UUCGGUAC-CUGUGGU------------UCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 114421 0.73 0.647707
Target:  5'- aCGAAGGUCAUcGAcCGCCGGGCCCu- -3'
miRNA:   3'- gGCUUUCGGUAcCU-GUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 62597 0.73 0.658175
Target:  5'- cCCGGAGGCCcUGGACugGCU--GCCCGAu -3'
miRNA:   3'- -GGCUUUCGGuACCUG--UGGuuCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 107266 0.72 0.672792
Target:  5'- uCCGGAGGCCGaacacgccgaccgccUGGccagACGCCAAcGCCCGGg -3'
miRNA:   3'- -GGCUUUCGGU---------------ACC----UGUGGUU-CGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 92967 0.72 0.679036
Target:  5'- cCCGGAa--CGUGGACGCCGuGGCCCGc -3'
miRNA:   3'- -GGCUUucgGUACCUGUGGU-UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 1482 0.72 0.679036
Target:  5'- gCCGGgcGCCAUGGcguCGCCcgcGCCCGAg -3'
miRNA:   3'- -GGCUuuCGGUACCu--GUGGuu-CGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 151612 0.72 0.698706
Target:  5'- gCCGggGGCCGggccgGGGgcguggccgcgucCAUCAGGCCCGc -3'
miRNA:   3'- -GGCuuUCGGUa----CCU-------------GUGGUUCGGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.