miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 5' -53.9 NC_001798.1 + 12254 0.72 0.699736
Target:  5'- aCCGuGGGGCCGcGGACgACCAGGCCgGu -3'
miRNA:   3'- -GGC-UUUCGGUaCCUG-UGGUUCGGgUu -5'
5194 5' -53.9 NC_001798.1 + 73294 0.72 0.699736
Target:  5'- cCCGAAcccacgacacccGGCCcacaGGACACgCAGGCCCGc -3'
miRNA:   3'- -GGCUU------------UCGGua--CCUGUG-GUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 27100 0.72 0.699736
Target:  5'- aCGAAGGUCA-GGugGCCcGAGCCCc- -3'
miRNA:   3'- gGCUUUCGGUaCCugUGG-UUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 61036 0.72 0.699736
Target:  5'- -gGggGGCCGggGGAC-CCGAGCCaCAGa -3'
miRNA:   3'- ggCuuUCGGUa-CCUGuGGUUCGG-GUU- -5'
5194 5' -53.9 NC_001798.1 + 34108 0.72 0.699736
Target:  5'- gUGggGGCgGUGGGCguaCGGGCCCGAc -3'
miRNA:   3'- gGCuuUCGgUACCUGug-GUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 28717 0.71 0.720197
Target:  5'- cCCGAggcccGAGCUcgGG-C-CCGAGCCCGAg -3'
miRNA:   3'- -GGCU-----UUCGGuaCCuGuGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 79112 0.71 0.730314
Target:  5'- cCUGGgcGCCAaGGGCGCCGAGCgCGc -3'
miRNA:   3'- -GGCUuuCGGUaCCUGUGGUUCGgGUu -5'
5194 5' -53.9 NC_001798.1 + 93308 0.71 0.730314
Target:  5'- gCCGcgGGCCucGUGGGCGCCAugguguucAGCaCCAAu -3'
miRNA:   3'- -GGCuuUCGG--UACCUGUGGU--------UCG-GGUU- -5'
5194 5' -53.9 NC_001798.1 + 85672 0.71 0.730314
Target:  5'- aCCGAcGGCgGggugcccGGGCGCCAcGCCCAGa -3'
miRNA:   3'- -GGCUuUCGgUa------CCUGUGGUuCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 134984 0.71 0.760089
Target:  5'- cCUGggGGCCuggcccgcgGUGGGCGCCAGGgUCGu -3'
miRNA:   3'- -GGCuuUCGG---------UACCUGUGGUUCgGGUu -5'
5194 5' -53.9 NC_001798.1 + 132147 0.71 0.760089
Target:  5'- gCCGggGGCCGgcgggcgGGGCGCCcccCCCGGa -3'
miRNA:   3'- -GGCuuUCGGUa------CCUGUGGuucGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 41383 0.71 0.760089
Target:  5'- gCCGGGgauGGCCGggagGGACAC--GGCCCGAc -3'
miRNA:   3'- -GGCUU---UCGGUa---CCUGUGguUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 79137 0.7 0.779361
Target:  5'- gCGGAGGCCGUGGAggaGCUggGCgCGc -3'
miRNA:   3'- gGCUUUCGGUACCUg--UGGuuCGgGUu -5'
5194 5' -53.9 NC_001798.1 + 107076 0.7 0.779361
Target:  5'- -gGGAGGCUGUGGGCcCgCAAGCCCc- -3'
miRNA:   3'- ggCUUUCGGUACCUGuG-GUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 44404 0.7 0.788794
Target:  5'- gCCGGGAGCaAUGGGguCCcgcGGCCCAGg -3'
miRNA:   3'- -GGCUUUCGgUACCUguGGu--UCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 131968 0.7 0.788794
Target:  5'- gCGGAucaucGCCAUGGACGCCAccGCCa-- -3'
miRNA:   3'- gGCUUu----CGGUACCUGUGGUu-CGGguu -5'
5194 5' -53.9 NC_001798.1 + 75451 0.7 0.788794
Target:  5'- aCGcAGGCCggGGugGCC-GGCCCGg -3'
miRNA:   3'- gGCuUUCGGuaCCugUGGuUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 78224 0.7 0.807207
Target:  5'- gCGAucGCC-UGGACGCCAuccGGgCCGAc -3'
miRNA:   3'- gGCUuuCGGuACCUGUGGU---UCgGGUU- -5'
5194 5' -53.9 NC_001798.1 + 103381 0.7 0.815279
Target:  5'- cCCGAGGGUCGUugaccacGGcgaGCACCcGGCCCAc -3'
miRNA:   3'- -GGCUUUCGGUA-------CC---UGUGGuUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 88659 0.7 0.816168
Target:  5'- gUCGc---CCAUGGcCACCAGGCCCGc -3'
miRNA:   3'- -GGCuuucGGUACCuGUGGUUCGGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.