miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 5' -53.9 NC_001798.1 + 153011 0.68 0.873529
Target:  5'- gCGGucGCCGgggcGGAguCCGGGCCCGc -3'
miRNA:   3'- gGCUuuCGGUa---CCUguGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 151612 0.72 0.698706
Target:  5'- gCCGggGGCCGggccgGGGgcguggccgcgucCAUCAGGCCCGc -3'
miRNA:   3'- -GGCuuUCGGUa----CCU-------------GUGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 150131 0.69 0.833555
Target:  5'- aCG-AGGCCGcgGGGC-CCGAGUCCGAc -3'
miRNA:   3'- gGCuUUCGGUa-CCUGuGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 149978 0.66 0.954122
Target:  5'- aCGggGGCgCGgcgcccgcGGACGCCGgggcgagcGGCCCGu -3'
miRNA:   3'- gGCuuUCG-GUa-------CCUGUGGU--------UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 149659 0.66 0.958033
Target:  5'- gCCGGgcGCCGggucgcGGGCcCCGGGCUCGGg -3'
miRNA:   3'- -GGCUuuCGGUa-----CCUGuGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 149474 0.66 0.940939
Target:  5'- gCGggGGCCGcGGcccGCAgCAGGUCCGc -3'
miRNA:   3'- gGCuuUCGGUaCC---UGUgGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 149304 0.8 0.276928
Target:  5'- aCCGGAGGCCGUGGAaguCCAGcgcGCCCAc -3'
miRNA:   3'- -GGCUUUCGGUACCUgu-GGUU---CGGGUu -5'
5194 5' -53.9 NC_001798.1 + 148788 0.69 0.858175
Target:  5'- -aGGGAGCCAgaacGAgGCCGGGCCCc- -3'
miRNA:   3'- ggCUUUCGGUac--CUgUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 147470 0.67 0.930915
Target:  5'- gCCGcguGAGCCGUccgccgggGGAC-CCAGGCuCCGGg -3'
miRNA:   3'- -GGCu--UUCGGUA--------CCUGuGGUUCG-GGUU- -5'
5194 5' -53.9 NC_001798.1 + 147236 0.69 0.850174
Target:  5'- gCGggGGCCccgGGGCcCCGGGCCg-- -3'
miRNA:   3'- gGCuuUCGGua-CCUGuGGUUCGGguu -5'
5194 5' -53.9 NC_001798.1 + 146579 0.68 0.887976
Target:  5'- gCCGcgGGCCAgcagacgGGccgcgGCGCCAgcGGCCCAc -3'
miRNA:   3'- -GGCuuUCGGUa------CC-----UGUGGU--UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 143815 0.66 0.958033
Target:  5'- cCCGGGcggcgcgcggccAGCCGuUGGAcCACCccGCCCAc -3'
miRNA:   3'- -GGCUU------------UCGGU-ACCU-GUGGuuCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 141720 0.66 0.945578
Target:  5'- aCGGAgcuGGCCAUGGcCAUCAAcGCCg-- -3'
miRNA:   3'- gGCUU---UCGGUACCuGUGGUU-CGGguu -5'
5194 5' -53.9 NC_001798.1 + 139385 0.66 0.936052
Target:  5'- gCGGGAcGUCc-GGGCACCAGGUCCGc -3'
miRNA:   3'- gGCUUU-CGGuaCCUGUGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 139060 0.67 0.907861
Target:  5'- gCUGGAGGCCGcGGGcCACCAcguggcGGCgCCAGu -3'
miRNA:   3'- -GGCUUUCGGUaCCU-GUGGU------UCG-GGUU- -5'
5194 5' -53.9 NC_001798.1 + 136508 0.68 0.880868
Target:  5'- cCCGAAAGCCAccaauACACCAgAGCCgAAc -3'
miRNA:   3'- -GGCUUUCGGUacc--UGUGGU-UCGGgUU- -5'
5194 5' -53.9 NC_001798.1 + 135790 0.67 0.913999
Target:  5'- gCCGGAggaGGCCGUGuGCGC--GGCCCGGg -3'
miRNA:   3'- -GGCUU---UCGGUACcUGUGguUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 135239 0.68 0.873529
Target:  5'- gCCGGAAGCCcggGGGCgGgCGGGCCUGGa -3'
miRNA:   3'- -GGCUUUCGGua-CCUG-UgGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 134984 0.71 0.760089
Target:  5'- cCUGggGGCCuggcccgcgGUGGGCGCCAGGgUCGu -3'
miRNA:   3'- -GGCuuUCGG---------UACCUGUGGUUCgGGUu -5'
5194 5' -53.9 NC_001798.1 + 132147 0.71 0.760089
Target:  5'- gCCGggGGCCGgcgggcgGGGCGCCcccCCCGGa -3'
miRNA:   3'- -GGCuuUCGGUa------CCUGUGGuucGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.