miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 3' -62.4 NC_001798.1 + 77596 0.66 0.600675
Target:  5'- cGCCCuGCaggagCUGGGCaagGUCAUCgGCGc -3'
miRNA:   3'- aUGGGuCGa----GACCCGg--CGGUAGgCGU- -5'
5195 3' -62.4 NC_001798.1 + 77698 0.66 0.551406
Target:  5'- cGCCCggggcagcagcgAGCgCUGGGCCGCCGgcgUCGa- -3'
miRNA:   3'- aUGGG------------UCGaGACCCGGCGGUa--GGCgu -5'
5195 3' -62.4 NC_001798.1 + 79942 0.73 0.247151
Target:  5'- gGCCCAGCUgggCUGGGCguccggagcggcggCGCCGcgUCCGCc -3'
miRNA:   3'- aUGGGUCGA---GACCCG--------------GCGGU--AGGCGu -5'
5195 3' -62.4 NC_001798.1 + 81696 0.69 0.400217
Target:  5'- -uUCCGGCUCUGccgccgcuuucuccGCCGCCGUgCCGCGc -3'
miRNA:   3'- auGGGUCGAGACc-------------CGGCGGUA-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 88089 0.7 0.380594
Target:  5'- -gUCUAGCUCgcggaGGGCgGCCAgCCGCGc -3'
miRNA:   3'- auGGGUCGAGa----CCCGgCGGUaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 91604 0.68 0.47187
Target:  5'- gGCCCGGCaggccgcgcuuaUGGGCgGCCggCCGCc -3'
miRNA:   3'- aUGGGUCGag----------ACCCGgCGGuaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 91886 1.06 0.000939
Target:  5'- aUACCCAGCUCUGGGCCGCCAUCCGCAg -3'
miRNA:   3'- -AUGGGUCGAGACCCGGCGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 94720 0.66 0.580857
Target:  5'- aACCCgcaguGGUUCUGGaCCGCCcUCCaGCGc -3'
miRNA:   3'- aUGGG-----UCGAGACCcGGCGGuAGG-CGU- -5'
5195 3' -62.4 NC_001798.1 + 104662 0.72 0.260774
Target:  5'- gGCCCcguGCUCguaGcGGCCGCCGgccgCCGCGa -3'
miRNA:   3'- aUGGGu--CGAGa--C-CCGGCGGUa---GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 105387 0.66 0.570013
Target:  5'- gGCCUggagggcGGCguUCUccaGGGCCGCCGcggCCGCGg -3'
miRNA:   3'- aUGGG-------UCG--AGA---CCCGGCGGUa--GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 108523 0.68 0.451989
Target:  5'- gACCCAGCUCaaGGGaCUGUCGcacaaccccggcgccUCCGCGc -3'
miRNA:   3'- aUGGGUCGAGa-CCC-GGCGGU---------------AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 115041 0.66 0.561178
Target:  5'- aGCCUGGaCgacgUGGGCCGCCAcCUGCu -3'
miRNA:   3'- aUGGGUC-Gag--ACCCGGCGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 115671 0.73 0.237465
Target:  5'- aACCUGGCUCUGGaGCUGCaccCCGCGu -3'
miRNA:   3'- aUGGGUCGAGACC-CGGCGguaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 115876 0.72 0.285913
Target:  5'- gGCgCCGGCUaccauaGCCGCCGUCCGCGg -3'
miRNA:   3'- aUG-GGUCGAgacc--CGGCGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 117029 0.66 0.607634
Target:  5'- -cCCCGGCcCUGGGggccaacuacuucuCCuCCAUCCGCc -3'
miRNA:   3'- auGGGUCGaGACCC--------------GGcGGUAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 121247 0.66 0.590751
Target:  5'- gUGCCUGGCggcggCgGGGgucCCGCUGUCCGCc -3'
miRNA:   3'- -AUGGGUCGa----GaCCC---GGCGGUAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 122123 0.66 0.600675
Target:  5'- uUugCCAGC-CggggGGGCCcCCGggCCGCGg -3'
miRNA:   3'- -AugGGUCGaGa---CCCGGcGGUa-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 122179 0.66 0.561178
Target:  5'- cACCCucguGC-CgGGGaCCGCCAagCCGCGa -3'
miRNA:   3'- aUGGGu---CGaGaCCC-GGCGGUa-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 128393 0.69 0.388692
Target:  5'- --gCCAGCUCUGGGCCcuGCU-UCgGCGg -3'
miRNA:   3'- augGGUCGAGACCCGG--CGGuAGgCGU- -5'
5195 3' -62.4 NC_001798.1 + 130238 0.66 0.580857
Target:  5'- aGCCCGGgUCUccGGGCgGCCcgCCa-- -3'
miRNA:   3'- aUGGGUCgAGA--CCCGgCGGuaGGcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.