miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 3' -62.4 NC_001798.1 + 40400 0.66 0.61062
Target:  5'- aGCauaCGGCaggUCUGGGuCCGCC-UUCGCGu -3'
miRNA:   3'- aUGg--GUCG---AGACCC-GGCGGuAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 40818 0.66 0.600675
Target:  5'- cGCCCc-CUggGGGCCGCUgguUCCGCGu -3'
miRNA:   3'- aUGGGucGAgaCCCGGCGGu--AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 42028 0.67 0.503435
Target:  5'- -cCCCGGCgUC-GGGCCGCaCAUCguaGCGg -3'
miRNA:   3'- auGGGUCG-AGaCCCGGCG-GUAGg--CGU- -5'
5195 3' -62.4 NC_001798.1 + 43080 0.76 0.149552
Target:  5'- cGCCgGGCUCgGGcGCCGCCG-CCGCGu -3'
miRNA:   3'- aUGGgUCGAGaCC-CGGCGGUaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 48356 0.67 0.494052
Target:  5'- gACCgCGGC-CgcccgGGGCCGCC--CCGCGg -3'
miRNA:   3'- aUGG-GUCGaGa----CCCGGCGGuaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 51926 0.67 0.503435
Target:  5'- gGCCC-GUgg-GGGCCGCCG-CCGUg -3'
miRNA:   3'- aUGGGuCGagaCCCGGCGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 52870 0.66 0.590751
Target:  5'- -uCCguGCUg-GGGCCGCgGgUCCGCGc -3'
miRNA:   3'- auGGguCGAgaCCCGGCGgU-AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 53612 0.66 0.571981
Target:  5'- cGCCCcGUUCaagagcgGGGCCGCCGcggccaaguacgccgCCGCGg -3'
miRNA:   3'- aUGGGuCGAGa------CCCGGCGGUa--------------GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 55006 0.68 0.475533
Target:  5'- cUugCCGGCg--GGGCCGCCcugCCGgGa -3'
miRNA:   3'- -AugGGUCGagaCCCGGCGGua-GGCgU- -5'
5195 3' -62.4 NC_001798.1 + 58023 0.73 0.243124
Target:  5'- --gCCGGCUC---GCCGCCAUCCGCGg -3'
miRNA:   3'- augGGUCGAGaccCGGCGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 58121 0.66 0.568047
Target:  5'- gGCCCGGCgUCUGGGUccuugugaaggcggCGCCGgagCCcaaGCAc -3'
miRNA:   3'- aUGGGUCG-AGACCCG--------------GCGGUa--GG---CGU- -5'
5195 3' -62.4 NC_001798.1 + 62816 0.66 0.61062
Target:  5'- gGCgCAGCUgUGGGCCcacgcGCCcccgcCCGCGu -3'
miRNA:   3'- aUGgGUCGAgACCCGG-----CGGua---GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 68340 0.68 0.457366
Target:  5'- cACCCAGCUCUGcgaaGGCgGCgUAUgUGCAg -3'
miRNA:   3'- aUGGGUCGAGAC----CCGgCG-GUAgGCGU- -5'
5195 3' -62.4 NC_001798.1 + 68573 0.75 0.164774
Target:  5'- cGCCCGaacagccGCUCgaGGGCCGCCuccaGUCCGCGc -3'
miRNA:   3'- aUGGGU-------CGAGa-CCCGGCGG----UAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 69839 0.66 0.570997
Target:  5'- cACUUGG-UCcGGGCCGCCGUCgGCc -3'
miRNA:   3'- aUGGGUCgAGaCCCGGCGGUAGgCGu -5'
5195 3' -62.4 NC_001798.1 + 70542 0.68 0.457366
Target:  5'- gACCCAcGCgCUGgaGGCCGCCGggCUGCGc -3'
miRNA:   3'- aUGGGU-CGaGAC--CCGGCGGUa-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 71223 0.67 0.503435
Target:  5'- cUGCUgCAGCUaggGGaGCCGCCcUCCGCc -3'
miRNA:   3'- -AUGG-GUCGAga-CC-CGGCGGuAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 73972 0.69 0.42219
Target:  5'- gGCCgCgGGCUCcGGGCCGCCG--CGCAu -3'
miRNA:   3'- aUGG-G-UCGAGaCCCGGCGGUagGCGU- -5'
5195 3' -62.4 NC_001798.1 + 76027 0.69 0.413653
Target:  5'- cGCCC-GCcCUGGGCCccgagGCCAUCCagGCGc -3'
miRNA:   3'- aUGGGuCGaGACCCGG-----CGGUAGG--CGU- -5'
5195 3' -62.4 NC_001798.1 + 76486 0.66 0.570997
Target:  5'- gGCgCAGCUCgGGGCUGgCCGaaCUGCAg -3'
miRNA:   3'- aUGgGUCGAGaCCCGGC-GGUa-GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.