miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 3' -62.4 NC_001798.1 + 1236 0.68 0.448423
Target:  5'- cGCCCAGCguaUCUgcgggggcGGGCC-CgCGUCCGCGu -3'
miRNA:   3'- aUGGGUCG---AGA--------CCCGGcG-GUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 1349 0.7 0.380594
Target:  5'- cGCgCAGCUCcgccGGGCCGCCG--CGCAc -3'
miRNA:   3'- aUGgGUCGAGa---CCCGGCGGUagGCGU- -5'
5195 3' -62.4 NC_001798.1 + 2438 0.68 0.466404
Target:  5'- -cCCCGGCggCUGGcGgCGCCAgCCGCc -3'
miRNA:   3'- auGGGUCGa-GACC-CgGCGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 3762 0.66 0.61062
Target:  5'- cGCCCAGCUC-GGGCgcccacacgggCGCCGgggCGCc -3'
miRNA:   3'- aUGGGUCGAGaCCCG-----------GCGGUag-GCGu -5'
5195 3' -62.4 NC_001798.1 + 3982 0.73 0.231917
Target:  5'- -gUCCAGCUCgaccgccgGGGCCGCCcggCCGUg -3'
miRNA:   3'- auGGGUCGAGa-------CCCGGCGGua-GGCGu -5'
5195 3' -62.4 NC_001798.1 + 4742 0.66 0.561178
Target:  5'- -cCCCGGacgCcgGGGCCGCCucGUCgGCAu -3'
miRNA:   3'- auGGGUCga-Ga-CCCGGCGG--UAGgCGU- -5'
5195 3' -62.4 NC_001798.1 + 4895 0.69 0.396902
Target:  5'- gAUCCGGagaUCcgGGGCCGCCGgucgucUCCGCc -3'
miRNA:   3'- aUGGGUCg--AGa-CCCGGCGGU------AGGCGu -5'
5195 3' -62.4 NC_001798.1 + 5448 0.68 0.466404
Target:  5'- cGCCCGGCgc-GGGCgGCU-UCCGCu -3'
miRNA:   3'- aUGGGUCGagaCCCGgCGGuAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 15550 0.69 0.430832
Target:  5'- gUGCCCGGCcCcgGGcguuGCCGCCG-CCGCGg -3'
miRNA:   3'- -AUGGGUCGaGa-CC----CGGCGGUaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 16178 0.68 0.466404
Target:  5'- gGCCCgcggggaccgggGGgaCgcacGGGCCGCCcUCCGCAc -3'
miRNA:   3'- aUGGG------------UCgaGa---CCCGGCGGuAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 25252 0.72 0.279454
Target:  5'- gACCCgcagGGCggCUGGcGCCGCCAgCCGCc -3'
miRNA:   3'- aUGGG----UCGa-GACC-CGGCGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 25682 0.71 0.319973
Target:  5'- --aCCGGCUCUgcGGGcCCGCCAcggCCGCc -3'
miRNA:   3'- augGGUCGAGA--CCC-GGCGGUa--GGCGu -5'
5195 3' -62.4 NC_001798.1 + 26358 0.66 0.550432
Target:  5'- gGCCCGGCggagCUgcgcGGGCCGCgGcgggaguUCUGCGc -3'
miRNA:   3'- aUGGGUCGa---GA----CCCGGCGgU-------AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 27870 0.67 0.493118
Target:  5'- cGCuCCGGCUCcGGGCCuacgccgagcccaGCCGcCCGCc -3'
miRNA:   3'- aUG-GGUCGAGaCCCGG-------------CGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 29170 0.68 0.475533
Target:  5'- ---gCAGCUUUuaacGGGCCGCCAUucCCGCu -3'
miRNA:   3'- auggGUCGAGA----CCCGGCGGUA--GGCGu -5'
5195 3' -62.4 NC_001798.1 + 29715 0.66 0.58778
Target:  5'- aACCCGGCaagagagagaccgcGGGCCGCCGUCuCGa- -3'
miRNA:   3'- aUGGGUCGaga-----------CCCGGCGGUAG-GCgu -5'
5195 3' -62.4 NC_001798.1 + 32033 0.68 0.48475
Target:  5'- gACCgCGGCcacGGGCCGCUcgccccggcGUCCGCGg -3'
miRNA:   3'- aUGG-GUCGagaCCCGGCGG---------UAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 35425 0.66 0.600675
Target:  5'- gGCCUaaugcggcgggaGGCg-UGGGCCGCUGgcgCCGCGg -3'
miRNA:   3'- aUGGG------------UCGagACCCGGCGGUa--GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 39403 0.67 0.512894
Target:  5'- cGCCUuucGCUCcgggaccgGGGCgCgGCCGUCCGCGu -3'
miRNA:   3'- aUGGGu--CGAGa-------CCCG-G-CGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 39541 0.7 0.356985
Target:  5'- cGCCUcgccguggguGGCgccgGGGCCGuCCGUCCGCGc -3'
miRNA:   3'- aUGGG----------UCGaga-CCCGGC-GGUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.