miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 3' -62.4 NC_001798.1 + 91886 1.06 0.000939
Target:  5'- aUACCCAGCUCUGGGCCGCCAUCCGCAg -3'
miRNA:   3'- -AUGGGUCGAGACCCGGCGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 43080 0.76 0.149552
Target:  5'- cGCCgGGCUCgGGcGCCGCCG-CCGCGu -3'
miRNA:   3'- aUGGgUCGAGaCC-CGGCGGUaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 68573 0.75 0.164774
Target:  5'- cGCCCGaacagccGCUCgaGGGCCGCCuccaGUCCGCGc -3'
miRNA:   3'- aUGGGU-------CGAGa-CCCGGCGG----UAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 149677 0.74 0.200889
Target:  5'- gGCCCcgGGCUCgGGGCCGCCcUCgCGUg -3'
miRNA:   3'- aUGGG--UCGAGaCCCGGCGGuAG-GCGu -5'
5195 3' -62.4 NC_001798.1 + 3982 0.73 0.231917
Target:  5'- -gUCCAGCUCgaccgccgGGGCCGCCcggCCGUg -3'
miRNA:   3'- auGGGUCGAGa-------CCCGGCGGua-GGCGu -5'
5195 3' -62.4 NC_001798.1 + 115671 0.73 0.237465
Target:  5'- aACCUGGCUCUGGaGCUGCaccCCGCGu -3'
miRNA:   3'- aUGGGUCGAGACC-CGGCGguaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 58023 0.73 0.243124
Target:  5'- --gCCGGCUC---GCCGCCAUCCGCGg -3'
miRNA:   3'- augGGUCGAGaccCGGCGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 79942 0.73 0.247151
Target:  5'- gGCCCAGCUgggCUGGGCguccggagcggcggCGCCGcgUCCGCc -3'
miRNA:   3'- aUGGGUCGA---GACCCG--------------GCGGU--AGGCGu -5'
5195 3' -62.4 NC_001798.1 + 135194 0.73 0.248894
Target:  5'- gGCCCAGCUCcuGGCCGCCc-UCGCGg -3'
miRNA:   3'- aUGGGUCGAGacCCGGCGGuaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 104662 0.72 0.260774
Target:  5'- gGCCCcguGCUCguaGcGGCCGCCGgccgCCGCGa -3'
miRNA:   3'- aUGGGu--CGAGa--C-CCGGCGGUa---GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 25252 0.72 0.279454
Target:  5'- gACCCgcagGGCggCUGGcGCCGCCAgCCGCc -3'
miRNA:   3'- aUGGG----UCGa-GACC-CGGCGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 115876 0.72 0.285913
Target:  5'- gGCgCCGGCUaccauaGCCGCCGUCCGCGg -3'
miRNA:   3'- aUG-GGUCGAgacc--CGGCGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 150154 0.71 0.319973
Target:  5'- gACCCGcGcCUCUuccgggggcGGGCCGCCGcccccUCCGCGg -3'
miRNA:   3'- aUGGGU-C-GAGA---------CCCGGCGGU-----AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 25682 0.71 0.319973
Target:  5'- --aCCGGCUCUgcGGGcCCGCCAcggCCGCc -3'
miRNA:   3'- augGGUCGAGA--CCC-GGCGGUa--GGCGu -5'
5195 3' -62.4 NC_001798.1 + 144241 0.71 0.319973
Target:  5'- aGCuCCGGCUCcaacagGGGCCGCCAggCGUc -3'
miRNA:   3'- aUG-GGUCGAGa-----CCCGGCGGUagGCGu -5'
5195 3' -62.4 NC_001798.1 + 138013 0.7 0.341827
Target:  5'- cGCgCCuGCagCUGGGUCGCCAgacCCGCGu -3'
miRNA:   3'- aUG-GGuCGa-GACCCGGCGGUa--GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 39541 0.7 0.356985
Target:  5'- cGCCUcgccguggguGGCgccgGGGCCGuCCGUCCGCGc -3'
miRNA:   3'- aUGGG----------UCGaga-CCCGGC-GGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 88089 0.7 0.380594
Target:  5'- -gUCUAGCUCgcggaGGGCgGCCAgCCGCGc -3'
miRNA:   3'- auGGGUCGAGa----CCCGgCGGUaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 1349 0.7 0.380594
Target:  5'- cGCgCAGCUCcgccGGGCCGCCG--CGCAc -3'
miRNA:   3'- aUGgGUCGAGa---CCCGGCGGUagGCGU- -5'
5195 3' -62.4 NC_001798.1 + 128393 0.69 0.388692
Target:  5'- --gCCAGCUCUGGGCCcuGCU-UCgGCGg -3'
miRNA:   3'- augGGUCGAGACCCGG--CGGuAGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.