miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 3' -62.4 NC_001798.1 + 4895 0.69 0.396902
Target:  5'- gAUCCGGagaUCcgGGGCCGCCGgucgucUCCGCc -3'
miRNA:   3'- aUGGGUCg--AGa-CCCGGCGGU------AGGCGu -5'
5195 3' -62.4 NC_001798.1 + 81696 0.69 0.400217
Target:  5'- -uUCCGGCUCUGccgccgcuuucuccGCCGCCGUgCCGCGc -3'
miRNA:   3'- auGGGUCGAGACc-------------CGGCGGUA-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 135375 0.69 0.413653
Target:  5'- cUGCUCGGCggggucauGGCCGCCGUCUGCc -3'
miRNA:   3'- -AUGGGUCGagac----CCGGCGGUAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 145639 0.69 0.413653
Target:  5'- cGCCCGGCagggGGGCC-CCGgcgCCGCGc -3'
miRNA:   3'- aUGGGUCGaga-CCCGGcGGUa--GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 76027 0.69 0.413653
Target:  5'- cGCCC-GCcCUGGGCCccgagGCCAUCCagGCGc -3'
miRNA:   3'- aUGGGuCGaGACCCGG-----CGGUAGG--CGU- -5'
5195 3' -62.4 NC_001798.1 + 73972 0.69 0.42219
Target:  5'- gGCCgCgGGCUCcGGGCCGCCG--CGCAu -3'
miRNA:   3'- aUGG-G-UCGAGaCCCGGCGGUagGCGU- -5'
5195 3' -62.4 NC_001798.1 + 15550 0.69 0.430832
Target:  5'- gUGCCCGGCcCcgGGcguuGCCGCCG-CCGCGg -3'
miRNA:   3'- -AUGGGUCGaGa-CC----CGGCGGUaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 1236 0.68 0.448423
Target:  5'- cGCCCAGCguaUCUgcgggggcGGGCC-CgCGUCCGCGu -3'
miRNA:   3'- aUGGGUCG---AGA--------CCCGGcG-GUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 108523 0.68 0.451989
Target:  5'- gACCCAGCUCaaGGGaCUGUCGcacaaccccggcgccUCCGCGc -3'
miRNA:   3'- aUGGGUCGAGa-CCC-GGCGGU---------------AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 70542 0.68 0.457366
Target:  5'- gACCCAcGCgCUGgaGGCCGCCGggCUGCGc -3'
miRNA:   3'- aUGGGU-CGaGAC--CCGGCGGUa-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 68340 0.68 0.457366
Target:  5'- cACCCAGCUCUGcgaaGGCgGCgUAUgUGCAg -3'
miRNA:   3'- aUGGGUCGAGAC----CCGgCG-GUAgGCGU- -5'
5195 3' -62.4 NC_001798.1 + 134463 0.68 0.463682
Target:  5'- -cCCCGGCgcgcggUUGGcgugggcgcgccugGCCGCCAUUCGCGa -3'
miRNA:   3'- auGGGUCGa-----GACC--------------CGGCGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 2438 0.68 0.466404
Target:  5'- -cCCCGGCggCUGGcGgCGCCAgCCGCc -3'
miRNA:   3'- auGGGUCGa-GACC-CgGCGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 16178 0.68 0.466404
Target:  5'- gGCCCgcggggaccgggGGgaCgcacGGGCCGCCcUCCGCAc -3'
miRNA:   3'- aUGGG------------UCgaGa---CCCGGCGGuAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 5448 0.68 0.466404
Target:  5'- cGCCCGGCgc-GGGCgGCU-UCCGCu -3'
miRNA:   3'- aUGGGUCGagaCCCGgCGGuAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 91604 0.68 0.47187
Target:  5'- gGCCCGGCaggccgcgcuuaUGGGCgGCCggCCGCc -3'
miRNA:   3'- aUGGGUCGag----------ACCCGgCGGuaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 29170 0.68 0.475533
Target:  5'- ---gCAGCUUUuaacGGGCCGCCAUucCCGCu -3'
miRNA:   3'- auggGUCGAGA----CCCGGCGGUA--GGCGu -5'
5195 3' -62.4 NC_001798.1 + 55006 0.68 0.475533
Target:  5'- cUugCCGGCg--GGGCCGCCcugCCGgGa -3'
miRNA:   3'- -AugGGUCGagaCCCGGCGGua-GGCgU- -5'
5195 3' -62.4 NC_001798.1 + 32033 0.68 0.48475
Target:  5'- gACCgCGGCcacGGGCCGCUcgccccggcGUCCGCGg -3'
miRNA:   3'- aUGG-GUCGagaCCCGGCGG---------UAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 27870 0.67 0.493118
Target:  5'- cGCuCCGGCUCcGGGCCuacgccgagcccaGCCGcCCGCc -3'
miRNA:   3'- aUG-GGUCGAGaCCCGG-------------CGGUaGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.