miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 3' -62.4 NC_001798.1 + 122179 0.66 0.561178
Target:  5'- cACCCucguGC-CgGGGaCCGCCAagCCGCGa -3'
miRNA:   3'- aUGGGu---CGaGaCCC-GGCGGUa-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 4742 0.66 0.561178
Target:  5'- -cCCCGGacgCcgGGGCCGCCucGUCgGCAu -3'
miRNA:   3'- auGGGUCga-Ga-CCCGGCGG--UAGgCGU- -5'
5195 3' -62.4 NC_001798.1 + 115041 0.66 0.561178
Target:  5'- aGCCUGGaCgacgUGGGCCGCCAcCUGCu -3'
miRNA:   3'- aUGGGUC-Gag--ACCCGGCGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 152362 0.66 0.561178
Target:  5'- -cUCCGGgUCUccuccucccgccGGGCCGCCGcUCCGUc -3'
miRNA:   3'- auGGGUCgAGA------------CCCGGCGGU-AGGCGu -5'
5195 3' -62.4 NC_001798.1 + 77698 0.66 0.551406
Target:  5'- cGCCCggggcagcagcgAGCgCUGGGCCGCCGgcgUCGa- -3'
miRNA:   3'- aUGGG------------UCGaGACCCGGCGGUa--GGCgu -5'
5195 3' -62.4 NC_001798.1 + 26358 0.66 0.550432
Target:  5'- gGCCCGGCggagCUgcgcGGGCCGCgGcgggaguUCUGCGc -3'
miRNA:   3'- aUGGGUCGa---GA----CCCGGCGgU-------AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 39403 0.67 0.512894
Target:  5'- cGCCUuucGCUCcgggaccgGGGCgCgGCCGUCCGCGu -3'
miRNA:   3'- aUGGGu--CGAGa-------CCCG-G-CGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 42028 0.67 0.503435
Target:  5'- -cCCCGGCgUC-GGGCCGCaCAUCguaGCGg -3'
miRNA:   3'- auGGGUCG-AGaCCCGGCG-GUAGg--CGU- -5'
5195 3' -62.4 NC_001798.1 + 51926 0.67 0.503435
Target:  5'- gGCCC-GUgg-GGGCCGCCG-CCGUg -3'
miRNA:   3'- aUGGGuCGagaCCCGGCGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 71223 0.67 0.503435
Target:  5'- cUGCUgCAGCUaggGGaGCCGCCcUCCGCc -3'
miRNA:   3'- -AUGG-GUCGAga-CC-CGGCGGuAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 48356 0.67 0.494052
Target:  5'- gACCgCGGC-CgcccgGGGCCGCC--CCGCGg -3'
miRNA:   3'- aUGG-GUCGaGa----CCCGGCGGuaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 27870 0.67 0.493118
Target:  5'- cGCuCCGGCUCcGGGCCuacgccgagcccaGCCGcCCGCc -3'
miRNA:   3'- aUG-GGUCGAGaCCCGG-------------CGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 32033 0.68 0.48475
Target:  5'- gACCgCGGCcacGGGCCGCUcgccccggcGUCCGCGg -3'
miRNA:   3'- aUGG-GUCGagaCCCGGCGG---------UAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 29170 0.68 0.475533
Target:  5'- ---gCAGCUUUuaacGGGCCGCCAUucCCGCu -3'
miRNA:   3'- auggGUCGAGA----CCCGGCGGUA--GGCGu -5'
5195 3' -62.4 NC_001798.1 + 55006 0.68 0.475533
Target:  5'- cUugCCGGCg--GGGCCGCCcugCCGgGa -3'
miRNA:   3'- -AugGGUCGagaCCCGGCGGua-GGCgU- -5'
5195 3' -62.4 NC_001798.1 + 91604 0.68 0.47187
Target:  5'- gGCCCGGCaggccgcgcuuaUGGGCgGCCggCCGCc -3'
miRNA:   3'- aUGGGUCGag----------ACCCGgCGGuaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 2438 0.68 0.466404
Target:  5'- -cCCCGGCggCUGGcGgCGCCAgCCGCc -3'
miRNA:   3'- auGGGUCGa-GACC-CgGCGGUaGGCGu -5'
5195 3' -62.4 NC_001798.1 + 16178 0.68 0.466404
Target:  5'- gGCCCgcggggaccgggGGgaCgcacGGGCCGCCcUCCGCAc -3'
miRNA:   3'- aUGGG------------UCgaGa---CCCGGCGGuAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 5448 0.68 0.466404
Target:  5'- cGCCCGGCgc-GGGCgGCU-UCCGCu -3'
miRNA:   3'- aUGGGUCGagaCCCGgCGGuAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 134463 0.68 0.463682
Target:  5'- -cCCCGGCgcgcggUUGGcgugggcgcgccugGCCGCCAUUCGCGa -3'
miRNA:   3'- auGGGUCGa-----GACC--------------CGGCGGUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.