miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 3' -62.4 NC_001798.1 + 70542 0.68 0.457366
Target:  5'- gACCCAcGCgCUGgaGGCCGCCGggCUGCGc -3'
miRNA:   3'- aUGGGU-CGaGAC--CCGGCGGUa-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 68340 0.68 0.457366
Target:  5'- cACCCAGCUCUGcgaaGGCgGCgUAUgUGCAg -3'
miRNA:   3'- aUGGGUCGAGAC----CCGgCG-GUAgGCGU- -5'
5195 3' -62.4 NC_001798.1 + 108523 0.68 0.451989
Target:  5'- gACCCAGCUCaaGGGaCUGUCGcacaaccccggcgccUCCGCGc -3'
miRNA:   3'- aUGGGUCGAGa-CCC-GGCGGU---------------AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 1236 0.68 0.448423
Target:  5'- cGCCCAGCguaUCUgcgggggcGGGCC-CgCGUCCGCGu -3'
miRNA:   3'- aUGGGUCG---AGA--------CCCGGcG-GUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 15550 0.69 0.430832
Target:  5'- gUGCCCGGCcCcgGGcguuGCCGCCG-CCGCGg -3'
miRNA:   3'- -AUGGGUCGaGa-CC----CGGCGGUaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 73972 0.69 0.42219
Target:  5'- gGCCgCgGGCUCcGGGCCGCCG--CGCAu -3'
miRNA:   3'- aUGG-G-UCGAGaCCCGGCGGUagGCGU- -5'
5195 3' -62.4 NC_001798.1 + 135375 0.69 0.413653
Target:  5'- cUGCUCGGCggggucauGGCCGCCGUCUGCc -3'
miRNA:   3'- -AUGGGUCGagac----CCGGCGGUAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 76027 0.69 0.413653
Target:  5'- cGCCC-GCcCUGGGCCccgagGCCAUCCagGCGc -3'
miRNA:   3'- aUGGGuCGaGACCCGG-----CGGUAGG--CGU- -5'
5195 3' -62.4 NC_001798.1 + 145639 0.69 0.413653
Target:  5'- cGCCCGGCagggGGGCC-CCGgcgCCGCGc -3'
miRNA:   3'- aUGGGUCGaga-CCCGGcGGUa--GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 81696 0.69 0.400217
Target:  5'- -uUCCGGCUCUGccgccgcuuucuccGCCGCCGUgCCGCGc -3'
miRNA:   3'- auGGGUCGAGACc-------------CGGCGGUA-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 4895 0.69 0.396902
Target:  5'- gAUCCGGagaUCcgGGGCCGCCGgucgucUCCGCc -3'
miRNA:   3'- aUGGGUCg--AGa-CCCGGCGGU------AGGCGu -5'
5195 3' -62.4 NC_001798.1 + 128393 0.69 0.388692
Target:  5'- --gCCAGCUCUGGGCCcuGCU-UCgGCGg -3'
miRNA:   3'- augGGUCGAGACCCGG--CGGuAGgCGU- -5'
5195 3' -62.4 NC_001798.1 + 88089 0.7 0.380594
Target:  5'- -gUCUAGCUCgcggaGGGCgGCCAgCCGCGc -3'
miRNA:   3'- auGGGUCGAGa----CCCGgCGGUaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 1349 0.7 0.380594
Target:  5'- cGCgCAGCUCcgccGGGCCGCCG--CGCAc -3'
miRNA:   3'- aUGgGUCGAGa---CCCGGCGGUagGCGU- -5'
5195 3' -62.4 NC_001798.1 + 39541 0.7 0.356985
Target:  5'- cGCCUcgccguggguGGCgccgGGGCCGuCCGUCCGCGc -3'
miRNA:   3'- aUGGG----------UCGaga-CCCGGC-GGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 138013 0.7 0.341827
Target:  5'- cGCgCCuGCagCUGGGUCGCCAgacCCGCGu -3'
miRNA:   3'- aUG-GGuCGa-GACCCGGCGGUa--GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 25682 0.71 0.319973
Target:  5'- --aCCGGCUCUgcGGGcCCGCCAcggCCGCc -3'
miRNA:   3'- augGGUCGAGA--CCC-GGCGGUa--GGCGu -5'
5195 3' -62.4 NC_001798.1 + 144241 0.71 0.319973
Target:  5'- aGCuCCGGCUCcaacagGGGCCGCCAggCGUc -3'
miRNA:   3'- aUG-GGUCGAGa-----CCCGGCGGUagGCGu -5'
5195 3' -62.4 NC_001798.1 + 150154 0.71 0.319973
Target:  5'- gACCCGcGcCUCUuccgggggcGGGCCGCCGcccccUCCGCGg -3'
miRNA:   3'- aUGGGU-C-GAGA---------CCCGGCGGU-----AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 115876 0.72 0.285913
Target:  5'- gGCgCCGGCUaccauaGCCGCCGUCCGCGg -3'
miRNA:   3'- aUG-GGUCGAgacc--CGGCGGUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.