miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 3' -62.4 NC_001798.1 + 152362 0.66 0.561178
Target:  5'- -cUCCGGgUCUccuccucccgccGGGCCGCCGcUCCGUc -3'
miRNA:   3'- auGGGUCgAGA------------CCCGGCGGU-AGGCGu -5'
5195 3' -62.4 NC_001798.1 + 150154 0.71 0.319973
Target:  5'- gACCCGcGcCUCUuccgggggcGGGCCGCCGcccccUCCGCGg -3'
miRNA:   3'- aUGGGU-C-GAGA---------CCCGGCGGU-----AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 149677 0.74 0.200889
Target:  5'- gGCCCcgGGCUCgGGGCCGCCcUCgCGUg -3'
miRNA:   3'- aUGGG--UCGAGaCCCGGCGGuAG-GCGu -5'
5195 3' -62.4 NC_001798.1 + 149466 0.66 0.600675
Target:  5'- gGCuCCAcGCgg-GGGCCGCgGcCCGCAg -3'
miRNA:   3'- aUG-GGU-CGagaCCCGGCGgUaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 145639 0.69 0.413653
Target:  5'- cGCCCGGCagggGGGCC-CCGgcgCCGCGc -3'
miRNA:   3'- aUGGGUCGaga-CCCGGcGGUa--GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 144241 0.71 0.319973
Target:  5'- aGCuCCGGCUCcaacagGGGCCGCCAggCGUc -3'
miRNA:   3'- aUG-GGUCGAGa-----CCCGGCGGUagGCGu -5'
5195 3' -62.4 NC_001798.1 + 138013 0.7 0.341827
Target:  5'- cGCgCCuGCagCUGGGUCGCCAgacCCGCGu -3'
miRNA:   3'- aUG-GGuCGa-GACCCGGCGGUa--GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 137927 0.66 0.590751
Target:  5'- gGCCCGcGcCUCccccGGCCGCCcgGUCCGCc -3'
miRNA:   3'- aUGGGU-C-GAGac--CCGGCGG--UAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 135375 0.69 0.413653
Target:  5'- cUGCUCGGCggggucauGGCCGCCGUCUGCc -3'
miRNA:   3'- -AUGGGUCGagac----CCGGCGGUAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 135194 0.73 0.248894
Target:  5'- gGCCCAGCUCcuGGCCGCCc-UCGCGg -3'
miRNA:   3'- aUGGGUCGAGacCCGGCGGuaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 134463 0.68 0.463682
Target:  5'- -cCCCGGCgcgcggUUGGcgugggcgcgccugGCCGCCAUUCGCGa -3'
miRNA:   3'- auGGGUCGa-----GACC--------------CGGCGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 130238 0.66 0.580857
Target:  5'- aGCCCGGgUCUccGGGCgGCCcgCCa-- -3'
miRNA:   3'- aUGGGUCgAGA--CCCGgCGGuaGGcgu -5'
5195 3' -62.4 NC_001798.1 + 128393 0.69 0.388692
Target:  5'- --gCCAGCUCUGGGCCcuGCU-UCgGCGg -3'
miRNA:   3'- augGGUCGAGACCCGG--CGGuAGgCGU- -5'
5195 3' -62.4 NC_001798.1 + 122179 0.66 0.561178
Target:  5'- cACCCucguGC-CgGGGaCCGCCAagCCGCGa -3'
miRNA:   3'- aUGGGu---CGaGaCCC-GGCGGUa-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 122123 0.66 0.600675
Target:  5'- uUugCCAGC-CggggGGGCCcCCGggCCGCGg -3'
miRNA:   3'- -AugGGUCGaGa---CCCGGcGGUa-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 121247 0.66 0.590751
Target:  5'- gUGCCUGGCggcggCgGGGgucCCGCUGUCCGCc -3'
miRNA:   3'- -AUGGGUCGa----GaCCC---GGCGGUAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 117029 0.66 0.607634
Target:  5'- -cCCCGGCcCUGGGggccaacuacuucuCCuCCAUCCGCc -3'
miRNA:   3'- auGGGUCGaGACCC--------------GGcGGUAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 115876 0.72 0.285913
Target:  5'- gGCgCCGGCUaccauaGCCGCCGUCCGCGg -3'
miRNA:   3'- aUG-GGUCGAgacc--CGGCGGUAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 115671 0.73 0.237465
Target:  5'- aACCUGGCUCUGGaGCUGCaccCCGCGu -3'
miRNA:   3'- aUGGGUCGAGACC-CGGCGguaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 115041 0.66 0.561178
Target:  5'- aGCCUGGaCgacgUGGGCCGCCAcCUGCu -3'
miRNA:   3'- aUGGGUC-Gag--ACCCGGCGGUaGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.