miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5197 3' -52.3 NC_001798.1 + 27017 0.66 0.98546
Target:  5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3'
miRNA:   3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5'
5197 3' -52.3 NC_001798.1 + 26808 0.66 0.98546
Target:  5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3'
miRNA:   3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5'
5197 3' -52.3 NC_001798.1 + 26838 0.66 0.98546
Target:  5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3'
miRNA:   3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5'
5197 3' -52.3 NC_001798.1 + 26868 0.66 0.98546
Target:  5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3'
miRNA:   3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5'
5197 3' -52.3 NC_001798.1 + 26898 0.66 0.98546
Target:  5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3'
miRNA:   3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5'
5197 3' -52.3 NC_001798.1 + 26957 0.66 0.98546
Target:  5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3'
miRNA:   3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5'
5197 3' -52.3 NC_001798.1 + 26987 0.66 0.98546
Target:  5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3'
miRNA:   3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5'
5197 3' -52.3 NC_001798.1 + 92679 0.67 0.979503
Target:  5'- --uAUCUGG-UGAUcacgGAGGgCUUCCGGg -3'
miRNA:   3'- cucUAGACCuACUG----CUCCaGAAGGCC- -5'
5197 3' -52.3 NC_001798.1 + 38932 0.67 0.974629
Target:  5'- gGGGcgCaGGcgcGUGGCGAGGUUUUCCa- -3'
miRNA:   3'- -CUCuaGaCC---UACUGCUCCAGAAGGcc -5'
5197 3' -52.3 NC_001798.1 + 40123 0.68 0.950986
Target:  5'- uAGGUCgccggggcugGGAUGGCGGGuGUCcUCCGa -3'
miRNA:   3'- cUCUAGa---------CCUACUGCUC-CAGaAGGCc -5'
5197 3' -52.3 NC_001798.1 + 26627 0.68 0.950986
Target:  5'- cGGAcugUUUGGGgagUGACGGGGggggaaaCUUCCGGg -3'
miRNA:   3'- cUCU---AGACCU---ACUGCUCCa------GAAGGCC- -5'
5197 3' -52.3 NC_001798.1 + 144585 0.69 0.937393
Target:  5'- cGGGcggCUGGGUGGCGAGGggCUUCg-- -3'
miRNA:   3'- -CUCua-GACCUACUGCUCCa-GAAGgcc -5'
5197 3' -52.3 NC_001798.1 + 115153 0.69 0.937393
Target:  5'- cGGAUCUGGuggccauaGGCGAcaggcuGGUCUUCCuGGa -3'
miRNA:   3'- cUCUAGACCua------CUGCU------CCAGAAGG-CC- -5'
5197 3' -52.3 NC_001798.1 + 45920 0.69 0.932376
Target:  5'- cGGGUCUcgGGggGugGcGGUCgcgUCCGGa -3'
miRNA:   3'- cUCUAGA--CCuaCugCuCCAGa--AGGCC- -5'
5197 3' -52.3 NC_001798.1 + 22752 0.7 0.890408
Target:  5'- cGAGGUCgcgaUGGcgGACGAGGacgggggacgUCU-CCGGg -3'
miRNA:   3'- -CUCUAG----ACCuaCUGCUCC----------AGAaGGCC- -5'
5197 3' -52.3 NC_001798.1 + 12798 0.7 0.890408
Target:  5'- cGGGAUCcucuaagagGGccGAguccuCGGGGUCUUCCGGa -3'
miRNA:   3'- -CUCUAGa--------CCuaCU-----GCUCCAGAAGGCC- -5'
5197 3' -52.3 NC_001798.1 + 135157 0.71 0.876273
Target:  5'- -cGGUCUGGAcGGCGcGGUUUuguuucUCCGGg -3'
miRNA:   3'- cuCUAGACCUaCUGCuCCAGA------AGGCC- -5'
5197 3' -52.3 NC_001798.1 + 26928 0.73 0.802306
Target:  5'- gGGGGUCgGGcgGGCGGGGUCgggCGGg -3'
miRNA:   3'- -CUCUAGaCCuaCUGCUCCAGaagGCC- -5'
5197 3' -52.3 NC_001798.1 + 90205 1.12 0.005115
Target:  5'- gGAGAUCUGGAUGACGAGGUCUUCCGGg -3'
miRNA:   3'- -CUCUAGACCUACUGCUCCAGAAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.