miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5197 5' -58.1 NC_001798.1 + 4097 0.68 0.736009
Target:  5'- gGGCCGGGGcgggcucggcccuGGGCgGGCUCGgccggggcgCCgccCCCg -3'
miRNA:   3'- -CUGGCCUU-------------UCCGgUCGAGCa--------GGa--GGG- -5'
5197 5' -58.1 NC_001798.1 + 88750 0.68 0.727327
Target:  5'- gGACCGGggGcgcgcauGCCGGC-CG-CCUCCg -3'
miRNA:   3'- -CUGGCCuuUc------CGGUCGaGCaGGAGGg -5'
5197 5' -58.1 NC_001798.1 + 122834 0.68 0.727327
Target:  5'- -gUCGGggGcGGCggcggCGGCUCGUcCCUCUCa -3'
miRNA:   3'- cuGGCCuuU-CCG-----GUCGAGCA-GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 102494 0.68 0.707812
Target:  5'- aGugCGGGGacGGGCCGGCgccggggUGUCCguaggccaccgUCCCc -3'
miRNA:   3'- -CugGCCUU--UCCGGUCGa------GCAGG-----------AGGG- -5'
5197 5' -58.1 NC_001798.1 + 28708 0.69 0.697957
Target:  5'- uGCCuGGAgcccGAGGCCcgAGCUCGggcCCgagCCCg -3'
miRNA:   3'- cUGG-CCU----UUCCGG--UCGAGCa--GGa--GGG- -5'
5197 5' -58.1 NC_001798.1 + 41391 0.69 0.697957
Target:  5'- uGGCCGGGAGGGacaCGGCcCGaCCUUCg -3'
miRNA:   3'- -CUGGCCUUUCCg--GUCGaGCaGGAGGg -5'
5197 5' -58.1 NC_001798.1 + 15099 0.69 0.688049
Target:  5'- -uUCGGAaggcGAGGCCGGUggcgcugucgUCGUCCUCg- -3'
miRNA:   3'- cuGGCCU----UUCCGGUCG----------AGCAGGAGgg -5'
5197 5' -58.1 NC_001798.1 + 31907 0.69 0.688049
Target:  5'- -gUCGGAcucGGGCCccgcGGcCUCGUCCUCgCCu -3'
miRNA:   3'- cuGGCCUu--UCCGG----UC-GAGCAGGAG-GG- -5'
5197 5' -58.1 NC_001798.1 + 139058 0.69 0.678096
Target:  5'- cGGCUGGAGgccgcGGGCCaccacguggcGGCgccaGUCCUCCUc -3'
miRNA:   3'- -CUGGCCUU-----UCCGG----------UCGag--CAGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 90398 0.69 0.678096
Target:  5'- gGGCgCGGuuGGGCCGGCgCGU--UCCCg -3'
miRNA:   3'- -CUG-GCCuuUCCGGUCGaGCAggAGGG- -5'
5197 5' -58.1 NC_001798.1 + 96992 0.69 0.668107
Target:  5'- cGGCgGGGccAGGGCCGGCcCG-CCgCCCg -3'
miRNA:   3'- -CUGgCCU--UUCCGGUCGaGCaGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 151610 0.69 0.648053
Target:  5'- cGGCCGGGGgccGGGCCgggGGCguggccgCGUCCaucaggCCCg -3'
miRNA:   3'- -CUGGCCUU---UCCGG---UCGa------GCAGGa-----GGG- -5'
5197 5' -58.1 NC_001798.1 + 36323 0.69 0.648053
Target:  5'- gGGCCGGGgccGGGGCUcGCUgGUCCgCCg -3'
miRNA:   3'- -CUGGCCU---UUCCGGuCGAgCAGGaGGg -5'
5197 5' -58.1 NC_001798.1 + 47072 0.7 0.617899
Target:  5'- uGCCGGGGcgacAGcGCCGGUguggUGUCCgUCCCg -3'
miRNA:   3'- cUGGCCUU----UC-CGGUCGa---GCAGG-AGGG- -5'
5197 5' -58.1 NC_001798.1 + 69305 0.7 0.617899
Target:  5'- cGCCGGGGAcGGUCAGC----CCUCCCg -3'
miRNA:   3'- cUGGCCUUU-CCGGUCGagcaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 40281 0.7 0.607858
Target:  5'- cGACCGG---GGCCGGCUuucCGaaacUCCUCCUu -3'
miRNA:   3'- -CUGGCCuuuCCGGUCGA---GC----AGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 104784 0.7 0.597835
Target:  5'- aGCgCGGAGgcGGGCCAGCagGUCC-CCg -3'
miRNA:   3'- cUG-GCCUU--UCCGGUCGagCAGGaGGg -5'
5197 5' -58.1 NC_001798.1 + 149755 0.71 0.577869
Target:  5'- gGGCCGaGGGAGGUUu-CUCGUCuCUCCCc -3'
miRNA:   3'- -CUGGC-CUUUCCGGucGAGCAG-GAGGG- -5'
5197 5' -58.1 NC_001798.1 + 18306 0.71 0.558052
Target:  5'- cGCCGGGAAGGCCggGGC-CGUguuugUCUCCg -3'
miRNA:   3'- cUGGCCUUUCCGG--UCGaGCA-----GGAGGg -5'
5197 5' -58.1 NC_001798.1 + 147056 0.71 0.538432
Target:  5'- cGGCCGGAGGGGCCcccgcacCUCGgcggCCgCCCc -3'
miRNA:   3'- -CUGGCCUUUCCGGuc-----GAGCa---GGaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.