miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5197 5' -58.1 NC_001798.1 + 37271 0.66 0.810215
Target:  5'- uACCGGAAacuaugauugGGGCCcacccuGGCgugggaggCGaCCUCCCg -3'
miRNA:   3'- cUGGCCUU----------UCCGG------UCGa-------GCaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 139370 0.67 0.801518
Target:  5'- cGGCgGGGAGGGCUcGCgggaCGUCCgggCaCCa -3'
miRNA:   3'- -CUGgCCUUUCCGGuCGa---GCAGGa--G-GG- -5'
5197 5' -58.1 NC_001798.1 + 66883 0.67 0.801518
Target:  5'- gGGCUugGGAAAGGCCacgggggcggGGC-CGUCgCUCCa -3'
miRNA:   3'- -CUGG--CCUUUCCGG----------UCGaGCAG-GAGGg -5'
5197 5' -58.1 NC_001798.1 + 1714 0.67 0.801518
Target:  5'- cGGCCGGA--GGCCAGCacggugCGgcgCaggUCCCg -3'
miRNA:   3'- -CUGGCCUuuCCGGUCGa-----GCa--Gg--AGGG- -5'
5197 5' -58.1 NC_001798.1 + 36110 0.67 0.792674
Target:  5'- ---gGGggGGGcCCGGCUgCGUCUcgccgcgaUCCCg -3'
miRNA:   3'- cuggCCuuUCC-GGUCGA-GCAGG--------AGGG- -5'
5197 5' -58.1 NC_001798.1 + 127947 0.67 0.78369
Target:  5'- -cCCGGGcgaaAAGGcCCGGCccgCGUCCccggCCCu -3'
miRNA:   3'- cuGGCCU----UUCC-GGUCGa--GCAGGa---GGG- -5'
5197 5' -58.1 NC_001798.1 + 48397 0.67 0.78369
Target:  5'- cGACCGcacGGGCCcccgcccGCUCGgCUUCCCg -3'
miRNA:   3'- -CUGGCcuuUCCGGu------CGAGCaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 152094 0.67 0.78369
Target:  5'- gGGCCGG--GGGUCGGCcccgucaagCGUCCccgCCCc -3'
miRNA:   3'- -CUGGCCuuUCCGGUCGa--------GCAGGa--GGG- -5'
5197 5' -58.1 NC_001798.1 + 57565 0.67 0.78369
Target:  5'- gGACgCGGAGGGGgCGGCauugcucgCGUUCcCCCg -3'
miRNA:   3'- -CUG-GCCUUUCCgGUCGa-------GCAGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 13545 0.67 0.765336
Target:  5'- -cCCGGggGGGUcgguCAGCUgGUCCaaaaCCg -3'
miRNA:   3'- cuGGCCuuUCCG----GUCGAgCAGGag--GG- -5'
5197 5' -58.1 NC_001798.1 + 111589 0.67 0.765336
Target:  5'- uGAgCGGggGGcCCGGCggggCGgCCUCCUg -3'
miRNA:   3'- -CUgGCCuuUCcGGUCGa---GCaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 86448 0.67 0.765336
Target:  5'- -cCCGGGgacgGGGGCCGGUUCGUgagCCUgCUu -3'
miRNA:   3'- cuGGCCU----UUCCGGUCGAGCA---GGAgGG- -5'
5197 5' -58.1 NC_001798.1 + 38429 0.67 0.755983
Target:  5'- gGGCCGGGccGGGGCCccacauuuauccGGUgggucaUCGcccUCCUCCCa -3'
miRNA:   3'- -CUGGCCU--UUCCGG------------UCG------AGC---AGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 84346 0.67 0.755983
Target:  5'- cGAUCGGGAAGGCC---UCGUCggaCCCa -3'
miRNA:   3'- -CUGGCCUUUCCGGucgAGCAGga-GGG- -5'
5197 5' -58.1 NC_001798.1 + 55981 0.67 0.755983
Target:  5'- cGCCGGGGAGGCCgcgggggcgaggGGCUgGUaggcgggUCCCg -3'
miRNA:   3'- cUGGCCUUUCCGG------------UCGAgCAgg-----AGGG- -5'
5197 5' -58.1 NC_001798.1 + 40133 0.67 0.755983
Target:  5'- gGGCUGGGAuGGCgGGU--GUCCUCCg -3'
miRNA:   3'- -CUGGCCUUuCCGgUCGagCAGGAGGg -5'
5197 5' -58.1 NC_001798.1 + 67563 0.68 0.746525
Target:  5'- cGCCaGGggGGGCgAcCUCGggCUCCCg -3'
miRNA:   3'- cUGG-CCuuUCCGgUcGAGCagGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 68820 0.68 0.746525
Target:  5'- aGACggCGGugacgcuaGCCAGCUCGUCCUgugugaCCCa -3'
miRNA:   3'- -CUG--GCCuuuc----CGGUCGAGCAGGA------GGG- -5'
5197 5' -58.1 NC_001798.1 + 144440 0.68 0.746525
Target:  5'- cGGCCGcuaGAcGGGUCGGCU-GUCCugcUCCCg -3'
miRNA:   3'- -CUGGC---CUuUCCGGUCGAgCAGG---AGGG- -5'
5197 5' -58.1 NC_001798.1 + 132146 0.68 0.73697
Target:  5'- cGCCGG--GGGCCGGCgggCGgggcgCCcCCCc -3'
miRNA:   3'- cUGGCCuuUCCGGUCGa--GCa----GGaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.