miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5197 5' -58.1 NC_001798.1 + 40281 0.7 0.607858
Target:  5'- cGACCGG---GGCCGGCUuucCGaaacUCCUCCUu -3'
miRNA:   3'- -CUGGCCuuuCCGGUCGA---GC----AGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 41391 0.69 0.697957
Target:  5'- uGGCCGGGAGGGacaCGGCcCGaCCUUCg -3'
miRNA:   3'- -CUGGCCUUUCCg--GUCGaGCaGGAGGg -5'
5197 5' -58.1 NC_001798.1 + 46405 0.66 0.835338
Target:  5'- uGGCCGGcAGGGCCA-C-CGcCCcCCCg -3'
miRNA:   3'- -CUGGCCuUUCCGGUcGaGCaGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 47072 0.7 0.617899
Target:  5'- uGCCGGGGcgacAGcGCCGGUguggUGUCCgUCCCg -3'
miRNA:   3'- cUGGCCUU----UC-CGGUCGa---GCAGG-AGGG- -5'
5197 5' -58.1 NC_001798.1 + 48397 0.67 0.78369
Target:  5'- cGACCGcacGGGCCcccgcccGCUCGgCUUCCCg -3'
miRNA:   3'- -CUGGCcuuUCCGGu------CGAGCaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 50042 0.75 0.3379
Target:  5'- --aCGGAucgacaaucgAGGGCCuGCUCGaCCUCCCg -3'
miRNA:   3'- cugGCCU----------UUCCGGuCGAGCaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 51848 0.66 0.835338
Target:  5'- cACaCGGAGGGGCgCGGCUCGgagCUCg- -3'
miRNA:   3'- cUG-GCCUUUCCG-GUCGAGCag-GAGgg -5'
5197 5' -58.1 NC_001798.1 + 52981 0.66 0.819601
Target:  5'- cGACCGGGcuGGgCGGCcCGccacgcccauaggcgCCUCCCc -3'
miRNA:   3'- -CUGGCCUuuCCgGUCGaGCa--------------GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 55981 0.67 0.755983
Target:  5'- cGCCGGGGAGGCCgcgggggcgaggGGCUgGUaggcgggUCCCg -3'
miRNA:   3'- cUGGCCUUUCCGG------------UCGAgCAgg-----AGGG- -5'
5197 5' -58.1 NC_001798.1 + 57565 0.67 0.78369
Target:  5'- gGACgCGGAGGGGgCGGCauugcucgCGUUCcCCCg -3'
miRNA:   3'- -CUG-GCCUUUCCgGUCGa-------GCAGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 62453 0.73 0.444698
Target:  5'- cGCCGGu-GGGCCGcGCgacggcgcccggUCGUCCUCCUc -3'
miRNA:   3'- cUGGCCuuUCCGGU-CG------------AGCAGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 66883 0.67 0.801518
Target:  5'- gGGCUugGGAAAGGCCacgggggcggGGC-CGUCgCUCCa -3'
miRNA:   3'- -CUGG--CCUUUCCGG----------UCGaGCAG-GAGGg -5'
5197 5' -58.1 NC_001798.1 + 67563 0.68 0.746525
Target:  5'- cGCCaGGggGGGCgAcCUCGggCUCCCg -3'
miRNA:   3'- cUGG-CCuuUCCGgUcGAGCagGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 68780 0.66 0.835338
Target:  5'- -cCCGGGu-GGCCGGUgugUGUggCCUCCUg -3'
miRNA:   3'- cuGGCCUuuCCGGUCGa--GCA--GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 68820 0.68 0.746525
Target:  5'- aGACggCGGugacgcuaGCCAGCUCGUCCUgugugaCCCa -3'
miRNA:   3'- -CUG--GCCuuuc----CGGUCGAGCAGGA------GGG- -5'
5197 5' -58.1 NC_001798.1 + 69305 0.7 0.617899
Target:  5'- cGCCGGGGAcGGUCAGC----CCUCCCg -3'
miRNA:   3'- cUGGCCUUU-CCGGUCGagcaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 73837 0.76 0.295294
Target:  5'- aGCCGGggGGGUCGGUUCGugcaugcgcUCgUCCCu -3'
miRNA:   3'- cUGGCCuuUCCGGUCGAGC---------AGgAGGG- -5'
5197 5' -58.1 NC_001798.1 + 75455 0.74 0.401368
Target:  5'- aGGCCGGGGuGGCCGGCcCGgCCgcggCCCu -3'
miRNA:   3'- -CUGGCCUUuCCGGUCGaGCaGGa---GGG- -5'
5197 5' -58.1 NC_001798.1 + 82787 0.66 0.834526
Target:  5'- gGACuCGGAugauaccGAGGC--GCUCGacccCCUCCCa -3'
miRNA:   3'- -CUG-GCCU-------UUCCGguCGAGCa---GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 84346 0.67 0.755983
Target:  5'- cGAUCGGGAAGGCC---UCGUCggaCCCa -3'
miRNA:   3'- -CUGGCCUUUCCGGucgAGCAGga-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.