miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5197 5' -58.1 NC_001798.1 + 1714 0.67 0.801518
Target:  5'- cGGCCGGA--GGCCAGCacggugCGgcgCaggUCCCg -3'
miRNA:   3'- -CUGGCCUuuCCGGUCGa-----GCa--Gg--AGGG- -5'
5197 5' -58.1 NC_001798.1 + 2638 0.72 0.519054
Target:  5'- uGGCCGGGgcGGGGCUcuugcGCUUGcgcgCCUCCCg -3'
miRNA:   3'- -CUGGCCU--UUCCGGu----CGAGCa---GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 4097 0.68 0.736009
Target:  5'- gGGCCGGGGcgggcucggcccuGGGCgGGCUCGgccggggcgCCgccCCCg -3'
miRNA:   3'- -CUGGCCUU-------------UCCGgUCGAGCa--------GGa--GGG- -5'
5197 5' -58.1 NC_001798.1 + 5575 0.66 0.843366
Target:  5'- cGCCGGccccaaAGGGGCCGGCgagGUCgC-CCCg -3'
miRNA:   3'- cUGGCC------UUUCCGGUCGag-CAG-GaGGG- -5'
5197 5' -58.1 NC_001798.1 + 5919 0.66 0.843366
Target:  5'- -cCCGGAcggGGGGCgGGC-CGuUCCUCgCg -3'
miRNA:   3'- cuGGCCU---UUCCGgUCGaGC-AGGAGgG- -5'
5197 5' -58.1 NC_001798.1 + 7813 0.66 0.843366
Target:  5'- -gUCGGAcagGAGGCgCAGCUgGUUCauaCCCa -3'
miRNA:   3'- cuGGCCU---UUCCG-GUCGAgCAGGa--GGG- -5'
5197 5' -58.1 NC_001798.1 + 13545 0.67 0.765336
Target:  5'- -cCCGGggGGGUcgguCAGCUgGUCCaaaaCCg -3'
miRNA:   3'- cuGGCCuuUCCG----GUCGAgCAGGag--GG- -5'
5197 5' -58.1 NC_001798.1 + 15099 0.69 0.688049
Target:  5'- -uUCGGAaggcGAGGCCGGUggcgcugucgUCGUCCUCg- -3'
miRNA:   3'- cuGGCCU----UUCCGGUCG----------AGCAGGAGgg -5'
5197 5' -58.1 NC_001798.1 + 18306 0.71 0.558052
Target:  5'- cGCCGGGAAGGCCggGGC-CGUguuugUCUCCg -3'
miRNA:   3'- cUGGCCUUUCCGG--UCGaGCA-----GGAGGg -5'
5197 5' -58.1 NC_001798.1 + 22977 0.66 0.81621
Target:  5'- -uCCGGGGAGGCCGucgacgagccugccGCggacggCGUCgUCUCg -3'
miRNA:   3'- cuGGCCUUUCCGGU--------------CGa-----GCAGgAGGG- -5'
5197 5' -58.1 NC_001798.1 + 24684 0.66 0.851208
Target:  5'- uGGCCGGAGcccGGCCcGCcgCG-CC-CCCg -3'
miRNA:   3'- -CUGGCCUUu--CCGGuCGa-GCaGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 28052 0.66 0.848875
Target:  5'- cGACuCGGGAAccgcggucgagagcGcGCCGGCcgCGUCCUCgCu -3'
miRNA:   3'- -CUG-GCCUUU--------------C-CGGUCGa-GCAGGAGgG- -5'
5197 5' -58.1 NC_001798.1 + 28708 0.69 0.697957
Target:  5'- uGCCuGGAgcccGAGGCCcgAGCUCGggcCCgagCCCg -3'
miRNA:   3'- cUGG-CCU----UUCCGG--UCGAGCa--GGa--GGG- -5'
5197 5' -58.1 NC_001798.1 + 31907 0.69 0.688049
Target:  5'- -gUCGGAcucGGGCCccgcGGcCUCGUCCUCgCCu -3'
miRNA:   3'- cuGGCCUu--UCCGG----UC-GAGCAGGAG-GG- -5'
5197 5' -58.1 NC_001798.1 + 36110 0.67 0.792674
Target:  5'- ---gGGggGGGcCCGGCUgCGUCUcgccgcgaUCCCg -3'
miRNA:   3'- cuggCCuuUCC-GGUCGA-GCAGG--------AGGG- -5'
5197 5' -58.1 NC_001798.1 + 36323 0.69 0.648053
Target:  5'- gGGCCGGGgccGGGGCUcGCUgGUCCgCCg -3'
miRNA:   3'- -CUGGCCU---UUCCGGuCGAgCAGGaGGg -5'
5197 5' -58.1 NC_001798.1 + 37271 0.66 0.810215
Target:  5'- uACCGGAAacuaugauugGGGCCcacccuGGCgugggaggCGaCCUCCCg -3'
miRNA:   3'- cUGGCCUU----------UCCGG------UCGa-------GCaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 37403 0.66 0.835338
Target:  5'- cACCGGGcggguccguGGGGCCGGC-CGaCCaacCCCg -3'
miRNA:   3'- cUGGCCU---------UUCCGGUCGaGCaGGa--GGG- -5'
5197 5' -58.1 NC_001798.1 + 38429 0.67 0.755983
Target:  5'- gGGCCGGGccGGGGCCccacauuuauccGGUgggucaUCGcccUCCUCCCa -3'
miRNA:   3'- -CUGGCCU--UUCCGG------------UCG------AGC---AGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 40133 0.67 0.755983
Target:  5'- gGGCUGGGAuGGCgGGU--GUCCUCCg -3'
miRNA:   3'- -CUGGCCUUuCCGgUCGagCAGGAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.