miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5197 5' -58.1 NC_001798.1 + 90240 1.11 0.001519
Target:  5'- cGACCGGAAAGGCCAGCUCGUCCUCCCc -3'
miRNA:   3'- -CUGGCCUUUCCGGUCGAGCAGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 88053 0.83 0.113558
Target:  5'- cGCUGGggGGGCgGGCUCGUCC-CCUg -3'
miRNA:   3'- cUGGCCuuUCCGgUCGAGCAGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 73837 0.76 0.295294
Target:  5'- aGCCGGggGGGUCGGUUCGugcaugcgcUCgUCCCu -3'
miRNA:   3'- cUGGCCuuUCCGGUCGAGC---------AGgAGGG- -5'
5197 5' -58.1 NC_001798.1 + 50042 0.75 0.3379
Target:  5'- --aCGGAucgacaaucgAGGGCCuGCUCGaCCUCCCg -3'
miRNA:   3'- cugGCCU----------UUCCGGuCGAGCaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 103488 0.74 0.39303
Target:  5'- -uCUGGGuccAGGGCCAGCUCGcCCgggUCCCc -3'
miRNA:   3'- cuGGCCU---UUCCGGUCGAGCaGG---AGGG- -5'
5197 5' -58.1 NC_001798.1 + 75455 0.74 0.401368
Target:  5'- aGGCCGGGGuGGCCGGCcCGgCCgcggCCCu -3'
miRNA:   3'- -CUGGCCUUuCCGGUCGaGCaGGa---GGG- -5'
5197 5' -58.1 NC_001798.1 + 62453 0.73 0.444698
Target:  5'- cGCCGGu-GGGCCGcGCgacggcgcccggUCGUCCUCCUc -3'
miRNA:   3'- cUGGCCuuUCCGGU-CG------------AGCAGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 122129 0.72 0.503753
Target:  5'- aGCCGGggGGGCCcccgggccgcgggcgAGgaCGUCCUCa- -3'
miRNA:   3'- cUGGCCuuUCCGG---------------UCgaGCAGGAGgg -5'
5197 5' -58.1 NC_001798.1 + 135050 0.72 0.509469
Target:  5'- -cUCGGAGGcGGCCGGC-CG-CCUCCUg -3'
miRNA:   3'- cuGGCCUUU-CCGGUCGaGCaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 117520 0.72 0.509469
Target:  5'- aACCGGcuGGGGCCGGCccaGccCCUCCCg -3'
miRNA:   3'- cUGGCCu-UUCCGGUCGag-Ca-GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 2638 0.72 0.519054
Target:  5'- uGGCCGGGgcGGGGCUcuugcGCUUGcgcgCCUCCCg -3'
miRNA:   3'- -CUGGCCU--UUCCGGu----CGAGCa---GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 149665 0.72 0.519054
Target:  5'- cGCCGGGucgcGGGCCccgGGCUCGgggCCgCCCu -3'
miRNA:   3'- cUGGCCUu---UCCGG---UCGAGCa--GGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 129356 0.71 0.525807
Target:  5'- cGCCGGGccuggcGGGGCCcccggacccgccaaGGCaUCGaUCCUCCCg -3'
miRNA:   3'- cUGGCCU------UUCCGG--------------UCG-AGC-AGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 102214 0.71 0.537457
Target:  5'- cGCCGGGAgucgaccGGGCgCGGCUCGgggcgggCCUCgCCc -3'
miRNA:   3'- cUGGCCUU-------UCCG-GUCGAGCa------GGAG-GG- -5'
5197 5' -58.1 NC_001798.1 + 147056 0.71 0.538432
Target:  5'- cGGCCGGAGGGGCCcccgcacCUCGgcggCCgCCCc -3'
miRNA:   3'- -CUGGCCUUUCCGGuc-----GAGCa---GGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 18306 0.71 0.558052
Target:  5'- cGCCGGGAAGGCCggGGC-CGUguuugUCUCCg -3'
miRNA:   3'- cUGGCCUUUCCGG--UCGaGCA-----GGAGGg -5'
5197 5' -58.1 NC_001798.1 + 149755 0.71 0.577869
Target:  5'- gGGCCGaGGGAGGUUu-CUCGUCuCUCCCc -3'
miRNA:   3'- -CUGGC-CUUUCCGGucGAGCAG-GAGGG- -5'
5197 5' -58.1 NC_001798.1 + 104784 0.7 0.597835
Target:  5'- aGCgCGGAGgcGGGCCAGCagGUCC-CCg -3'
miRNA:   3'- cUG-GCCUU--UCCGGUCGagCAGGaGGg -5'
5197 5' -58.1 NC_001798.1 + 40281 0.7 0.607858
Target:  5'- cGACCGG---GGCCGGCUuucCGaaacUCCUCCUu -3'
miRNA:   3'- -CUGGCCuuuCCGGUCGA---GC----AGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 69305 0.7 0.617899
Target:  5'- cGCCGGGGAcGGUCAGC----CCUCCCg -3'
miRNA:   3'- cUGGCCUUU-CCGGUCGagcaGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.